UNIVERSITY OF MICHIGAN
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COLLEGE OF PHARMACY
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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Membrane Protein Lipid Composition Atlas
1.
Archaebacterial membrane
(54 proteins)
2.
Bacterial Gram-negative inner membrane
(269 proteins)
3.
Bacterial Gram-negative outer membrane
(136 proteins)
4.
Bacterial Gram-positive outer membrane
(7 proteins)
5.
Bacterial Gram-positive plasma membrane
(81 proteins)
6.
Chloroplast inner membrane
(1 protein)
7.
Chloroplast outer membrane (0 proteins)
8.
Cytoplasmic granule membrane
(1 protein)
9.
Endoplasmic reticulum membrane
(125 proteins)
10.
Endosome membrane
(35 proteins)
11.
Eukaryotic plasma membrane
(479 proteins)
12.
Golgi membrane
(22 proteins)
13.
Lysosome membrane
(17 proteins)
14.
Mitochondrial inner membrane
(51 proteins)
15.
Mitochondrial outer membrane
(20 proteins)
16.
Nuclear inner membrane
(3 proteins)
17.
Nuclear outer membrane
(5 proteins)
18.
Peroxisome membrane
(10 proteins)
19.
Secreted
(681 proteins)
20.
Thylakoid membrane
(31 proteins)
21.
Undefined
(75 proteins)
22.
Vacuole membrane
(16 proteins)
23.
Vesicle membrane
(13 proteins)
24.
Viral membrane
(40 proteins)
Lipid Composition in Golgi membrane
Golgi membrane
1p4u » ADP-ribosylation factor binding protein Gga3 domain
6.5 ± 1.1 Å
1r5l » Alpha-tocopherol transfer protein, closed state with ligand
4.3 ± 1.0 Å
1z9h » Microsomal prostaglandin E synthase 2
4.8 ± 0.5 Å
1oiz » Alpha-tocopherol transfer protein, open state
8.1 ± 1.0 Å
1aua » Phosphatidylinositol transfer protein sec14p
8.8 ± 1.1 Å
2e3q » STAR-related lipid transfer protein 11, complex with C18 ceramide
4.3 ± 2.0 Å
2e3m » STAR-related lipid transfer protein 11, apoprotein (open state)
3.4 ± 1.1 Å
2k5u » ADP-ribosylation factor 1 (ARF1)
2.9 ± 1.6 Å
2wwe » PX domain of Phosphoinositide-3-kinase, class 2, gamma polypeptide
2.5 ± 1.3 Å
2ksq » ADP-ribosylation factor 1 (ARF1), different conformation
4.7 ± 0.1 Å
3cwz » Rab6-interacting protein 1
3.7 ± 1.0 Å
1moz » ADP-ribosylation factor-like protein 1
0.7 ± 1.1 Å
1fzq » ADP-ribosylation factor-like protein 3
3.3 ± 1.1 Å
1m23 » Transmembrane emp24 domain-containing protein 10, peptide 207-219
4.9 ± 3.2 Å
1om9 » ADP-ribosylation factor-binding protein GGA1
6.1 ± 1.0 Å
1mhq » ADP-ribosylation factor-binding protein GGA2
4.2 ± 1.2 Å
2rj6 » Histo-blood group ABO system transferase
2.1 ± 1.3 Å
2nps » Vesicle-associated membrane protein complex
5.6 ± 2.2 Å
2ao7 » Disintegrin and metalloproteinase domain-containing protein 10
3.1 ± 1.4 Å
2pxx » Endothelin-converting enzyme 2
7.1 ± 1.3 Å
3ajm » Programmed cell death protein 10
2.7 ± 0.4 Å
3w68 » Alpha-tocopherol transfer protein, open state
6.0 ± 0.6 Å
Golgi membrane
Nat Rev Mol Cell Biol. 2008 Feb;9(2):112-24. Membrane lipids: where they are and how they behave.
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA