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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.1. All alpha monotopic/peripheral
(60 superfamilies)
Superfamily:
2.1.24. Saposin
(1 family)
1.C.35 (TCDB)
Family:
2.1.24.01. Saposin
1.C.35 (TCDB)
PF03489
,
PDBsum
NK-lysin
Sus scrofa
(
1nkl
)
Pore-forming peptide ameobapore A
Entamoeba histolytica
(
1of9
)
Pulmonary surfactant-associated protein B fragments
Homo sapiens
(
2dwf
, 1dfw, 1kmr, 1rg3, 1rg4, 1ssz, 2jou)
Saposin A (peptide 60-140)
Homo sapiens
(
2dob
)
Saposin A (peptide 60-140), conformation in disc
Homo sapiens
(
4ddj
)
Saposin B (peptide 195-273)
Homo sapiens
(
1n69
)
Saposin C (peptide 311-391)
Homo sapiens
(
1sn6
, 1m12, 2gtg, 2qyp, 2z9a)
Saposin D (peptide 405-486)
Homo sapiens
(
2rb3
, 2r0r, 2r1q, 3bqp, 3bqq)
Saposin-like domain of plant aspartic protease
Solanum tuberosum
(
3rfi
)
Saposin-like protein 5
Caenorhabditis elegans
(
2jsa
, 2js9)
Saposin-like protein Ac-SLP-1
Ancylostoma caninum
(
3s64
)
Saposin-like protein Na-SLP-1
Necator americanus
(
3s63
)
See list of these PDB codes
2.1.24.01. Saposin
1.C.35 (TCDB)
PF03489
,
PDBsum
(12 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
NK-lysin
1nkl
Sus scrofa
Secreted
1
0
2.8 ± 1.5
37 ± 12
-5.4
Pore-forming peptide ameobapore A
1of9
Entamoeba histolytica
Undefined
1
0
1.5 ± 1.0
13 ± 18
-2.3
Pulmonary surfactant-associated protein B fragments
2dwf
Homo sapiens
Secreted
1
0
5.6 ± 1.3
77 ± 4
-9.5
Saposin A (peptide 60-140)
2dob
Homo sapiens
Lysosome
1
0
2.0 ± 2.5
70 ± 29
-4.2
Saposin A (peptide 60-140), conformation in disc
4ddj
Homo sapiens
Lysosome
1
0
6.4 ± 0.9
89 ± 3
-8.5
Saposin B (peptide 195-273)
1n69
Homo sapiens
Lysosome
2
0
1.2 ± 1.0
58 ± 6
-2.4
Saposin C (peptide 311-391)
1sn6
Homo sapiens
Lysosome
1
0
4.8 ± 1.1
82 ± 7
-7.1
Saposin D (peptide 405-486)
2rb3
Homo sapiens
Secreted
1
0
2.2 ± 1.7
88 ± 10
-3.4
Saposin-like domain of plant aspartic protease
3rfi
Solanum tuberosum
Secreted
1
0
5.6 ± 3.2
66 ± 3
-9.1
Saposin-like protein 5
2jsa
Caenorhabditis elegans
Secreted
1
0
1.8 ± 2.2
47 ± 0
-3.7
Saposin-like protein Ac-SLP-1
3s64
Ancylostoma caninum
Secreted
1
0
4.2 ± 2.2
53 ± 16
-4.5
Saposin-like protein Na-SLP-1
3s63
Necator americanus
Secreted
1
0
2.2 ± 1.6
74 ± 10
-3.5
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA