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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.1. Alpha-helical polytopic
(72 superfamilies)
Superfamily:
1.1.08. Proton or Sodium translocating F-type, V-type and A-type ATPases
(1 family)
3.A.2 (TCDB)
Family:
1.1.08.01. V-type and F-type ATPases
3.A.2 (TCDB)
PF00137
,
PDBsum
ATP synthase of chloroplast
Spinacia oleracea
(
2w5j
)
Pisum sativum
(
3v3c
)
ATP synthase subunit b
Escherichia coli
(
1b9u
)
F-type Sodium ATPase
Ilyobacter tartaricus
(
1yce
, 2wgm)
F1F0 ATP synthase subunit c
Escherichia coli
(
1a91
, 1c0v, 1c17, 1c99, 1ijp, 1l6t, 1qo1)
Bacillus ps3
(
1wu0
)
F1F0 ATP synthase, F0 complex
Escherichia coli
(
1c17
, 1a91, 1c0v, 1c99, 1ijp, 1l6t, 1qo1)
Arthrospira platensis
(
2xqu
, 2wie, 2xqs, 2xqt)
Saccharomyces cerevisiae
(
4f4s
, 3u2f, 3u2y, 3u32, 3ud0)
F1F0 ATP synthase, F0 complex, conformation 1
Bacillus pseudofirmus
(
2x2v
)
F1F0 ATP synthase, F0 complex, conformation 2
Bacillus pseudofirmus
(
3zo6
)
F1F0 ATP synthase, F0F1 complex
Saccharomyces cerevisiae
(
2xok
, 2wpd)
F1F0 ATP synthase, F0F1 complex, different conformation
Saccharomyces cerevisiae
(
3zry
)
F1F0 ATP synthase, F0F1 complex, more complete model
Saccharomyces cerevisiae
(
4b2q
)
V-type Sodium ATPase
Enterococcus hirae
(
2bl2
, 2cyd, 2db4, 3aou)
See list of these PDB codes
1.1.08.01. V-type and F-type ATPases
3.A.2 (TCDB)
PF00137
,
PDBsum
(15 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
ATP synthase of chloroplast
2w5j
Spinacia oleracea
Thylakoid
14
28
32.8 ± 0.7
0 ± 0
-116.3
ATP synthase of chloroplast
3v3c
Pisum sativum
Thylakoid
14
28
32.0 ± 1.0
0 ± 0
-111.5
ATP synthase subunit b
1b9u
Escherichia coli
Bact. Gram-neg inner
1
1
29.8 ± 4.0
41 ± 2
-23.1
F-type Sodium ATPase
1yce
Ilyobacter tartaricus
Bact. Gram-neg inner
11
22
37.0 ± 0.5
0 ± 0
-104.0
F1F0 ATP synthase subunit c
1a91
Escherichia coli
Bact. Gram-neg inner
1
2
36.1 ± 6.7
21 ± 3
-21.4
F1F0 ATP synthase subunit c
1wu0
Bacillus ps3
Bact. Gram-pos plas.
1
2
31.9 ± 2.7
44 ± 1
-23.2
F1F0 ATP synthase, F0 complex
1c17
Escherichia coli
Bact. Gram-neg inner
13
28
34.6 ± 1.2
4 ± 0
-149.9
F1F0 ATP synthase, F0 complex
2xqu
Arthrospira platensis
Thylakoid
15
30
31.8 ± 0.8
0 ± 0
-129.7
F1F0 ATP synthase, F0 complex
4f4s
Saccharomyces cerevisiae
Mitochon. inner
10
20
38.4 ± 1.3
0 ± 0
-89.9
F1F0 ATP synthase, F0 complex, conformation 1
2x2v
Bacillus pseudofirmus
Bact. Gram-pos plas.
13
26
35.3 ± 1.2
0 ± 0
-137.7
F1F0 ATP synthase, F0 complex, conformation 2
3zo6
Bacillus pseudofirmus
Bact. Gram-pos plas.
12
24
39.6 ± 1.1
1 ± 0
-130.6
F1F0 ATP synthase, F0F1 complex
2xok
Saccharomyces cerevisiae
Mitochon. inner
10
20
35.3 ± 1.3
0 ± 0
-58.9
F1F0 ATP synthase, F0F1 complex, different conformation
3zry
Saccharomyces cerevisiae
Mitochon. inner
10
20
33.6 ± 1.9
4 ± 0
-56.0
F1F0 ATP synthase, F0F1 complex, more complete model
4b2q
Saccharomyces cerevisiae
Mitochon. inner
10
20
38.4 ± 0.9
0 ± 0
-115.7
V-type Sodium ATPase
2bl2
Enterococcus hirae
Bact. Gram-neg inner
10
40
35.6 ± 0.7
0 ± 0
-189.6
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA