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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.2. All beta monotopic/peripheral
(57 superfamilies)
Superfamily:
2.2.06. Lipocalins
(2 families)
8.A.33 (TCDB)
Family:
2.2.06.02. Fatty acid binding protein-like (n=10)
8.A.33 (TCDB)
PF00061
,
PDBsum
Adipocyte lipid-binding protein
Mus musculus
(
1a18
, 1a2d, 1ab0, 1acd, 1adl, 1alb, 1g74, 1g7n, 1lib, 1lic, 1lid, 1lie, 1lif, 2ans, 2q9s, 2qm9, 3hk1, 3js1, 3jsq)
Homo sapiens
(
1tow
, 1tou, 2hnx, 2nnq, 3fr2, 3fr4, 3fr5, 3p6c, 3p6d, 3p6e, 3p6f, 3p6g, 3p6h, 3psf, 3q6l, 3rzy)
Brain fatty acid binding protein
Homo sapiens
(
1fdq
, 1fe3, 1jjx)
Cellular retinoic acid-binding protein 1
Bos taurus
(
1cbr
, 1cbi)
Cellular retinoic acid-binding protein 2
Homo sapiens
(
1cbs
, 1blr, 1bm5, 1cbq, 1xca, 2cbs, 2fr3, 2frs, 2fs6, 2fs7, 2g78, 2g79, 2g7b, 3cbs, 3cr6, 3cwk, 3d95, 3d96, 3d97, 3f8a, 3f9d, 3fa6, 3fa7, 3fa8, 3fa9, 3fek, 3fel, 3fen, 3fep, 3i17)
Cellular retinol-binding protein II
Rattus norvegicus
(
1crb
, 1jbh, 1kgl, 1mx7, 1mx8)
Danio rerio
(
1kqw
, 1kqx)
Cellular retinol-binding protein III
Homo sapiens
(
1ggl
)
Der f 13 allergen
Dermatophagoides farinae (American house dust mite)
(
2a0a
)
Epidermal fatty acid binding protein
Homo sapiens
(
1b56
, 1jjj)
Fatty acid binding protein 6, ileal (Gastrotropin)
Danio rerio
(
3elz
, 3elx, 3em0)
Fatty acid-binding protein
Locusta migratoria (Migratory locust)
(
2flj
)
Schistocerca gregaria
(
1ftp
)
Gallus gallus
(
2k62
, 1mvq, 1tvq, 1tw4, 1zry, 2jn3, 2lfo)
Fatty acid-binding protein 2
Ambystoma mexicanum (Axolotl)
(
2ftb
, 2ft9)
Fatty acid-binding protein 9
Homo sapiens
(
4a60
)
Fatty acid-binding protein homolog 1
Echinococcus granulosus
(
1o8v
)
Fatty acid-binding protein Sm14
Schistosoma mansoni
(
1vyf
, 1vyg, 2poa)
Intestinal fatty acid binding protein
Rattus norvegicus
(
1icm
, 1a57, 1ael, 1dc9, 1icn, 1ifb, 1ifc, 1sa8, 1t8v, 1ure, 2ifb, 3akn)
Homo sapiens
(
1kzw
, 1kzx, 3akm, 3ifb)
Muscle fatty acid binding protein
Homo sapiens
(
1hmt
, 1g5w, 1hmr, 1hms, 2hmb)
Bos taurus
(
1bwy
)
Myelin P2 protein
Bos taurus
(
1pmp
)
Homo sapiens
(
2wut
, 3nr3, 4a1h, 4a1y, 4a8z)
Equus caballus
(
1yiv
)
Prostaglandin-H2 D-isomerase
Homo sapiens
(
3o22
, 2wwp, 3o19, 3o2y, 4imn, 4imo)
Retinoid-binding protein 7
Homo sapiens
(
1lpj
)
Retinol-binding protein 2
Rattus norvegicus
(
1opb
, 1b4m, 1eii, 1opa)
Homo sapiens
(
2rcq
, 2rct)
See list of these PDB codes
2.2.06.02. Fatty acid binding protein-like (n=10)
8.A.33 (TCDB)
PF00061
,
PDBsum
(29 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Adipocyte lipid-binding protein
1a18
Mus musculus
Eukaryo. plasma
1
0
3.7 ± 0.8
47 ± 7
-7.4
Adipocyte lipid-binding protein
1tow
Homo sapiens
Eukaryo. plasma
1
0
2.5 ± 1.7
51 ± 18
-4.5
Brain fatty acid binding protein
1fdq
Homo sapiens
Eukaryo. plasma
1
0
3.1 ± 1.4
51 ± 15
-4.9
Cellular retinoic acid-binding protein 1
1cbr
Bos taurus
Eukaryo. plasma
1
0
6.5 ± 1.1
45 ± 11
-5.4
Cellular retinoic acid-binding protein 2
1cbs
Homo sapiens
Nuclear outer
1
0
7.1 ± 1.9
41 ± 13
-5.9
Cellular retinol-binding protein II
1crb
Rattus norvegicus
Eukaryo. plasma
1
0
2.4 ± 1.7
52 ± 19
-5.3
Cellular retinol-binding protein II
1kqw
Danio rerio
Eukaryo. plasma
1
0
3.1 ± 1.3
45 ± 13
-4.9
Cellular retinol-binding protein III
1ggl
Homo sapiens
Eukaryo. plasma
1
0
3.3 ± 1.9
53 ± 16
-4.9
Der f 13 allergen
2a0a
Dermatophagoides farinae (American house dust mite)
Secreted
1
0
3.1 ± 1.3
50 ± 6
-3.5
Epidermal fatty acid binding protein
1b56
Homo sapiens
Eukaryo. plasma
1
0
2.5 ± 2.0
56 ± 18
-3.5
Fatty acid binding protein 6, ileal (Gastrotropin)
3elz
Danio rerio
Eukaryo. plasma
1
0
1.1 ± 0.9
85 ± 6
-2.4
Fatty acid-binding protein
2flj
Locusta migratoria (Migratory locust)
Eukaryo. plasma
1
0
1.2 ± 1.5
62 ± 10
-3.6
Fatty acid-binding protein
1ftp
Schistocerca gregaria
Eukaryo. plasma
1
0
4.5 ± 1.0
53 ± 11
-5.2
Fatty acid-binding protein
2k62
Gallus gallus
Eukaryo. plasma
1
0
0.0 ± 2.9
82 ± 13
-2.0
Fatty acid-binding protein 2
2ftb
Ambystoma mexicanum (Axolotl)
Eukaryo. plasma
1
0
0.6 ± 2.0
77 ± 20
-1.7
Fatty acid-binding protein 9
4a60
Homo sapiens
Eukaryo. plasma
1
0
3.2 ± 1.1
38 ± 6
-4.6
Fatty acid-binding protein homolog 1
1o8v
Echinococcus granulosus
Eukaryo. plasma
1
0
2.9 ± 1.0
48 ± 15
-5.8
Fatty acid-binding protein Sm14
1vyf
Schistosoma mansoni
Eukaryo. plasma
1
0
5.1 ± 1.2
42 ± 18
-5.2
Intestinal fatty acid binding protein
1icm
Rattus norvegicus
Eukaryo. plasma
1
0
3.5 ± 1.5
51 ± 18
-4.3
Intestinal fatty acid binding protein
1kzw
Homo sapiens
Eukaryo. plasma
1
0
2.9 ± 1.3
61 ± 12
-4.1
Muscle fatty acid binding protein
1hmt
Homo sapiens
Eukaryo. plasma
1
0
4.3 ± 1.6
49 ± 12
-5.0
Muscle fatty acid binding protein
1bwy
Bos taurus
Eukaryo. plasma
1
0
4.8 ± 1.3
71 ± 12
-6.6
Myelin P2 protein
1pmp
Bos taurus
Eukaryo. plasma
1
0
2.7 ± 1.3
61 ± 13
-6.1
Myelin P2 protein
2wut
Homo sapiens
Eukaryo. plasma
1
0
4.1 ± 0.5
47 ± 7
-3.4
Myelin P2 protein
1yiv
Equus caballus
Eukaryo. plasma
1
0
1.3 ± 1.7
53 ± 11
-4.8
Prostaglandin-H2 D-isomerase
3o22
Homo sapiens
Endoplasm. reticulum
1
0
0.7 ± 1.2
78 ± 13
-2.4
Retinoid-binding protein 7
1lpj
Homo sapiens
Eukaryo. plasma
1
0
2.6 ± 1.1
44 ± 13
-6.0
Retinol-binding protein 2
1opb
Rattus norvegicus
Eukaryo. plasma
1
0
1.9 ± 1.4
25 ± 7
-3.6
Retinol-binding protein 2
2rcq
Homo sapiens
Eukaryo. plasma
1
0
2.9 ± 1.7
55 ± 6
-5.5
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA