UNIVERSITY OF MICHIGAN
|
COLLEGE OF PHARMACY
|
MOSBERG LAB
PDB ID or protein name
HOME
ABOUT OPM
DOWNLOAD OPM FILES
CONTACT US
LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(10 classes)
Superfamilies
(208 superfamilies)
Families
(301 families)
Species
(294 species)
Localization
(22 types)
All proteins in OPM
(869 entries)
Protein Links
PDB Sum
,
PDB
,
MSD
,
SCOP
,
Swiss-Prot
,
Pfam
,
OCA
,
MMDB
Type:
1. Transmembrane
(2 classes)
Class:
1.1. Alpha-helical transmembrane
(54 superfamilies)
Superfamily:
1.1.01. Rhodopsin-like proteins
(2 families)
Family:
1.1.01.02. G-protein coupled receptors
A2A adenosine receptor bound to antagonist ZM241385
Homo sapiens
(
3eml
)
Beta1-adrenergic receptor
Meleagris gallopavo
(
2vt4
)
Beta2-adrenergic receptor
Homo sapiens
(
2rh1
, 2r4r, 2r4s, 3d4s)
Cholecystokinin A receptor fragment
Homo sapiens
(
1d6g
)
Melanocortin-4 receptor model (active state) with agonist NDP-MSH
Homo sapiens
(
2iqr
)
Melanocortin-4 receptor model (inactive state) with antagonist AGRP
Homo sapiens
(
2iqv
)
Mu-opioid receptor model (inactive state) with antagonist
Rattus norvegicus
(
2iql
)
Mu-opioid receptor model in active state with agonist
Rattus norvegicus
(
2iqo
)
Opsin, complex with C-terminal peptide of Galpha subunit of transducin
Bos taurus
(
3dqb
, 3cap)
Opsin, retinal-free state
Bos taurus
(
3cap
, 1f88, 1gzm, 1hzx, 1l9h, 1u19, 2g87, 2hpy, 2i35, 2i36, 2i37, 2iqk, 2j4y, 2ped, 3dqb)
Rhodopsin
Bos taurus
(
1gzm
, 1f88, 1hzx, 1jfp, 1l9h, 1ln6, 1u19, 2g87, 2hpy, 2i35, 2i36, 2i37, 2iqk, 2ped, 3c9l, 3c9m, 3cap)
Rhodopsin, a dimer
Bos taurus
(
2i36
, 1f88, 1gzm, 1hzx, 1l9h, 1u19, 2g87, 2hpy, 2i35, 2i37, 2iqk, 2ped, 3cap)
Rhodopsin, a photobleached state
Bos taurus
(
2i37
, 1f88, 1gzm, 1hzx, 1l9h, 1u19, 2g87, 2hpy, 2i35, 2i36, 2iqk, 2ped, 3cap)
Squid rhodopsin dimer
Todarodes pacificus
(
2z73
, 2ziy)
TM1-TM2 fragment of fungal STE2 receptor
Saccharomyces cerevisiae
(
2k9p
)
1.1.01.02. G-protein coupled receptors (15 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
A2A adenosine receptor bound to antagonist ZM241385
3eml
Homo sapiens
Eukaryo. plasma
1
7
33.2 ± 2.2
8 ± 4
-85.1
Beta1-adrenergic receptor
2vt4
Meleagris gallopavo
Eukaryo. plasma
1
7
32.7 ± 1.5
6 ± 4
-95.7
Beta2-adrenergic receptor
2rh1
Homo sapiens
Eukaryo. plasma
1
7
31.4 ± 1.3
8 ± 3
-84.3
Cholecystokinin A receptor fragment
1d6g
Homo sapiens
Eukaryo. plasma
2
0
8.0 ± 0.8
89 ± 7
-16.1
Melanocortin-4 receptor model (active state) with agonist NDP-MSH
2iqr
Homo sapiens
Eukaryo. plasma
1
7
34.5 ± 1.5
18 ± 3
-80.2
Melanocortin-4 receptor model (inactive state) with antagonist AGRP
2iqv
Homo sapiens
Eukaryo. plasma
1
7
33.5 ± 1.5
19 ± 3
-75.3
Mu-opioid receptor model (inactive state) with antagonist
2iql
Rattus norvegicus
Eukaryo. plasma
1
7
35.0 ± 1.0
9 ± 3
-97.7
Mu-opioid receptor model in active state with agonist
2iqo
Rattus norvegicus
Eukaryo. plasma
1
7
35.3 ± 1.6
1 ± 4
-95.7
Opsin, complex with C-terminal peptide of Galpha subunit of transducin
3dqb
Bos taurus
Eukaryo. plasma
1
7
31.5 ± 1.4
6 ± 3
-86.3
Opsin, retinal-free state
3cap
Bos taurus
Eukaryo. plasma
1
7
31.4 ± 1.3
6 ± 4
-86.0
Rhodopsin
1gzm
Bos taurus
Eukaryo. plasma
1
7
32.4 ± 1.7
8 ± 3
-91.3
Rhodopsin, a dimer
2i36
Bos taurus
Eukaryo. plasma
2
14
30.5 ± 1.4
0 ± 1
-161.5
Rhodopsin, a photobleached state
2i37
Bos taurus
Eukaryo. plasma
1
7
31.9 ± 1.4
5 ± 4
-88.6
Squid rhodopsin dimer
2z73
Todarodes pacificus
Eukaryo. plasma
2
14
33.5 ± 1.1
0 ± 2
-167.5
TM1-TM2 fragment of fungal STE2 receptor
2k9p
Saccharomyces cerevisiae
Eukaryo. plasma
1
2
31.5 ± 2.0
5 ± 7
-25.7
Copyright © 2005-
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA