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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.3. Alpha/Beta monotopic/peripheral
(33 superfamilies)
Superfamily:
2.3.06. Alpha/beta-hydrolases
(15 families)
Family:
2.3.06.07. Bacterial lipase
PF01674
,
PDBsum
Lipase
Pseudomonas glumae
(
1qge
, 1tah, 2es4)
Burkholderia cepacia
(
5lip
, 1hqd, 1oil, 1ys1, 1ys2, 2lip, 2nw6, 3lip, 4lip)
Pseudomonas glumae
(
1cvl
, 1qge, 1tah, 2es4)
Pseudomonas sp. MIS 38
(
2z8x
, 2z8z, 2zj6, 2zj7)
Lipase A
Bacillus subtilis
(
1isp
, 1i6w, 1r4z, 1r50, 1t2n, 1t4m, 2qxt, 2qxu, 3d2a, 3d2b, 3d2c, 3qmm)
Lipase L1
Bacillus stearothermophilus
(
1ku0
, 1ji3)
Lipase L1, different isoform
Bacillus stearothermophilus
(
1ji3
, 1ku0)
Lipase, complex with foldase
Pseudomonas glumae
(
2es4
, 1qge, 1tah)
Lipase, open (active) state
Pseudomonas aeruginosa
(
1ex9
)
PHB depolymerase PhaZ7
Pseudomonas lemoignei
(
2x5x
, 2vtv, 2x76)
Tentative lipase
Archaeoglobus fulgidus
(
2zyr
, 2zyh, 2zyi, 2zys)
Thermostable lipase
Geobacillus zalihae
(
2dsn
, 2z5g)
Triacylglycerol lipase
Geobacillus thermocatenulatus
(
2w22
)
See list of these PDB codes
2.3.06.07. Bacterial lipase
PF01674
,
PDBsum
(13 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Lipase
2z8x
Pseudomonas sp. MIS 38
Secreted
1
0
6.8 ± 1.7
74 ± 6
-8.2
Lipase
1qge
Pseudomonas glumae
Secreted
1
0
3.7 ± 0.9
24 ± 3
-7.7
Lipase
5lip
Burkholderia cepacia
Secreted
1
0
9.0 ± 1.0
46 ± 2
-30.6
Lipase
1cvl
Pseudomonas glumae
Secreted
1
0
9.9 ± 1.0
53 ± 9
-8.7
Lipase A
1isp
Bacillus subtilis
Secreted
1
0
1.9 ± 0.8
59 ± 12
-5.2
Lipase L1
1ku0
Bacillus stearothermophilus
Secreted
1
0
4.0 ± 0.6
23 ± 9
-8.9
Lipase L1, different isoform
1ji3
Bacillus stearothermophilus
Secreted
1
0
3.5 ± 1.7
22 ± 10
-8.0
Lipase, complex with foldase
2es4
Pseudomonas glumae
Secreted
2
0
8.5 ± 0.0
65 ± 2
-7.2
Lipase, open (active) state
1ex9
Pseudomonas aeruginosa
Secreted
1
0
11.0 ± 1.0
52 ± 5
-30.0
PHB depolymerase PhaZ7
2x5x
Pseudomonas lemoignei
Secreted
1
0
4.1 ± 3.0
54 ± 41
-5.6
Tentative lipase
2zyr
Archaeoglobus fulgidus
Secreted
1
0
3.0 ± 1.0
57 ± 8
-7.5
Thermostable lipase
2dsn
Geobacillus zalihae
Secreted
1
0
4.9 ± 0.9
32 ± 3
-7.7
Triacylglycerol lipase
2w22
Geobacillus thermocatenulatus
Secreted
1
0
5.6 ± 0.0
86 ± 0
-22.4
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA