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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.1. Alpha-helical polytopic
(72 superfamilies)
Superfamily:
1.1.26. APC (Amino acid-Polyamine-organoCation) superfamily
(6 families)
2.A.3 (TCDB)
Family:
1.1.26.04. Betaine/carnitine/choline transporters
2.A.15 (TCDB)
PF02028
,
PDBsum
Glycine betaine transporter BetP, alternative inward-facing open conformation
Corynebacterium glutamicum
(
3p03
)
Glycine betaine transporter BetP, asymmetric trimer, conformation 1
Corynebacterium glutamicum
(
4ain
)
Glycine betaine transporter BetP, asymmetric trimer, conformation 2
Corynebacterium glutamicum
(
4doj
)
Glycine betaine transporter BetP, substrate-bound
Corynebacterium glutamicum
(
2wit
)
L-carnitine/gamma-butyrobetaine antiporter CaiT, open inward-facing conformation
Escherichia coli
(
2wsx
)
Proteus mirabilis
(
2wsw
)
L-carnitine/gamma-butyrobetaine antiporter CaiT, substrate-bound
Escherichia coli
(
3hfx
)
See list of these PDB codes
1.1.26.04. Betaine/carnitine/choline transporters
2.A.15 (TCDB)
PF02028
,
PDBsum
(7 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Glycine betaine transporter BetP, alternative inward-facing open conformation
3p03
Corynebacterium glutamicum
Bact. Gram-pos plas.
3
36
29.8 ± 0.7
1 ± 0
-160.9
Glycine betaine transporter BetP, asymmetric trimer, conformation 1
4ain
Corynebacterium glutamicum
Bact. Gram-pos plas.
3
36
29.8 ± 0.6
0 ± 0
-198.8
Glycine betaine transporter BetP, asymmetric trimer, conformation 2
4doj
Corynebacterium glutamicum
Bact. Gram-pos plas.
3
36
30.0 ± 0.6
0 ± 0
-186.4
Glycine betaine transporter BetP, substrate-bound
2wit
Corynebacterium glutamicum
Bact. Gram-pos plas.
3
36
30.4 ± 1.2
0 ± 0
-198.6
L-carnitine/gamma-butyrobetaine antiporter CaiT, open inward-facing conformation
2wsx
Escherichia coli
Bact. Gram-neg inner
3
42
28.6 ± 0.7
7 ± 0
-212.7
L-carnitine/gamma-butyrobetaine antiporter CaiT, open inward-facing conformation
2wsw
Proteus mirabilis
Bact. Gram-neg inner
3
42
29.8 ± 0.5
0 ± 0
-218.9
L-carnitine/gamma-butyrobetaine antiporter CaiT, substrate-bound
3hfx
Escherichia coli
Bact. Gram-neg inner
3
42
29.8 ± 0.8
0 ± 0
-203.5
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA