UNIVERSITY OF MICHIGAN
|
COLLEGE OF PHARMACY
|
LOMIZE GROUP
PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(481 superfamilies)
Families
(903 families)
Species
(772 species)
Localization
(24 types)
All proteins in OPM
(3809 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.2. Bitopic proteins
(63 superfamilies)
Superfamily:
1.2.024. Vpu protein
(1 family)
1.A.40 (TCDB)
Family:
1.2.24.01. Vpu protein
1.A.40 (TCDB)
PF00558
,
PDBsum
Protein Vpu, cytoplasmic domain, in DPC micelles
Human immunodeficiency virus type 1
(
2k7y
)
Protein Vpu, cytoplasmic domain, structure in aqueous solution
Human immunodeficiency virus type 1
(
1vpu
)
Protein Vpu, transmembrane helix
Human immunodeficiency virus type 1
(
1pi7
, 1pi8, 1pje, 2gof, 2goh, 2jpx)
See list of these PDB codes
1.2.24.01. Vpu protein
1.A.40 (TCDB)
PF00558
,
PDBsum
(3 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Protein Vpu, cytoplasmic domain, in DPC micelles
2k7y
Human immunodeficiency virus type 1
Eukaryo. plasma
1
0
4.5 ± 1.4
54 ± 17
-5.4
Protein Vpu, cytoplasmic domain, structure in aqueous solution
1vpu
Human immunodeficiency virus type 1
Eukaryo. plasma
1
0
7.4 ± 2.1
64 ± 5
-5.6
Protein Vpu, transmembrane helix
1pi7
Human immunodeficiency virus type 1
Eukaryo. plasma
1
1
28.2 ± 5.4
38 ± 4
-23.8
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA