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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.3. Beta-barrel transmembrane
(26 superfamilies)
Superfamily:
1.3.24. Outer Membrane Factor (OMF) (n=12,S=18) trimeric
(1 family)
1.B.17 (TCDB)
Family:
1.3.24.01. TolC-like proteins
1.B.17 (TCDB)
PF02321
,
PDBsum
Cation efflux system protein CusC
Escherichia coli
(
3pik
)
Drug-Discharge Outer Membrane Protein, OprM
Pseudomonas aeruginosa
(
1wp1
, 3d5k)
Multidrug Resistance (VceC) protein
Vibrio cholerae
(
1yc9
)
Outer membrane protein TolC
Escherichia coli
(
1ek9
, 1tqq, 2vdd, 2vde, 2wmz, 2xmn)
Outer membrane protein TolC, mutant, open conformation 1
Escherichia coli
(
2wmz
)
Outer membrane protein TolC, mutant, open conformation 2
Escherichia coli
(
2vde
)
Outer membrane protein TolC, mutant, open conformation 3
Escherichia coli
(
2vdd
)
Outer membrane protein TolC, mutant, open conformation 4
Escherichia coli
(
2xmn
)
See list of these PDB codes
1.3.24.01. TolC-like proteins
1.B.17 (TCDB)
PF02321
,
PDBsum
(8 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Cation efflux system protein CusC
3pik
Escherichia coli
Bact. Gram-neg outer
3
12
24.3 ± 1.2
1 ± 0
-33.8
Drug-Discharge Outer Membrane Protein, OprM
1wp1
Pseudomonas aeruginosa
Bact. Gram-neg outer
3
12
24.7 ± 1.2
0 ± 0
-64.0
Multidrug Resistance (VceC) protein
1yc9
Vibrio cholerae
Bact. Gram-neg outer
3
12
24.6 ± 1.0
0 ± 0
-62.2
Outer membrane protein TolC
1ek9
Escherichia coli
Bact. Gram-neg outer
3
12
24.6 ± 1.4
0 ± 2
-56.1
Outer membrane protein TolC, mutant, open conformation 1
2wmz
Escherichia coli
Bact. Gram-neg outer
3
12
24.4 ± 0.8
0 ± 0
-52.8
Outer membrane protein TolC, mutant, open conformation 2
2vde
Escherichia coli
Archaebac.
3
12
24.4 ± 1.2
0 ± 0
-57.4
Outer membrane protein TolC, mutant, open conformation 3
2vdd
Escherichia coli
Bact. Gram-neg outer
3
12
24.4 ± 1.2
0 ± 0
-57.7
Outer membrane protein TolC, mutant, open conformation 4
2xmn
Escherichia coli
Bact. Gram-neg outer
3
12
23.6 ± 1.4
0 ± 0
-50.5
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA