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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.2. All beta monotopic/peripheral
(57 superfamilies)
Superfamily:
2.2.06. Lipocalins
(2 families)
8.A.33 (TCDB)
Family:
2.2.06.01. Retinol binding protein-like (n=8,S=12)
PF08212
,
PDBsum
Allergen Bos d 2
Bos taurus
(
1bj7
)
Apolipoprotein D
Homo sapiens
(
2hzq
, 2apd, 2hzr)
Beta-lactoglobulin
Bos taurus
(
3nq9
, 1b0o, 1b8e, 1beb, 1bso, 1bsq, 1bsy, 1dv9, 1gx8, 1gx9, 1gxa, 1mfh, 1qg5, 1uz2, 2akq, 2blg, 2gj5, 2q2m, 2q2p, 2q39, 2r56, 3blg, 3hq3, 3kza, 3npo)
Complement component C8 gamma chain
Homo sapiens
(
1lf7
, 1iw2, 2ova, 2ovd, 2ove, 2qos, 2rd7)
Epididymal-specific lipocalin-5
Rattus norvegicus
(
1epb
, 1epa)
Extracellular fatty acid-binding protein
Coturnix coturnix japonica (Japanese quail)
(
2kt4
, 1jzu)
Neutrophil gelatinase-associated lipocalin
Homo sapiens
(
3fw5
, 1dfv, 1l6m, 1ngl, 1qqs, 1x71, 1x89, 1x8u, 3by0, 3cbc, 3cmp, 3dsz, 3dtq, 3fw4, 3hwd, 3hwe, 3hwf, 3hwg, 3i0a, 3k3l)
Outer membrane lipoprotein Blc
Escherichia coli
(
1qwd
, 2aco, 3mbt, 3zvv)
Prostaglandin-H2 D-isomerase
Mus musculus
(
2ktd
, 2czt, 2czu, 2e4j)
Retinol binding protein
Bos taurus
(
1kt6
, 1erb, 1fel, 1fem, 1fen, 1hbp, 1hbq, 1jyd, 1jyj, 1kt3, 1kt4, 1kt5, 1kt7)
Sus scrofa
(
1aqb
)
Homo sapiens
(
1rbp
, 1brp, 1brq, 1jyd, 1jyj, 1qab, 1rlb, 2wq9, 2wqa, 2wr6, 3bsz, 3fmz)
Retinol binding protein, plasma isoform
Gallus gallus
(
1iiu
)
See list of these PDB codes
2.2.06.01. Retinol binding protein-like (n=8,S=12)
PF08212
,
PDBsum
(13 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Allergen Bos d 2
1bj7
Bos taurus
Secreted
1
0
3.1 ± 1.3
50 ± 6
-3.5
Apolipoprotein D
2hzq
Homo sapiens
Secreted
1
0
4.5 ± 0.9
69 ± 5
-7.8
Beta-lactoglobulin
3nq9
Bos taurus
Secreted
1
0
0.5 ± 0.9
89 ± 4
-2.7
Complement component C8 gamma chain
1lf7
Homo sapiens
Secreted
1
0
1.9 ± 2.2
43 ± 12
-2.6
Epididymal-specific lipocalin-5
1epb
Rattus norvegicus
Secreted
1
0
6.4 ± 1.1
74 ± 4
-3.8
Extracellular fatty acid-binding protein
2kt4
Coturnix coturnix japonica (Japanese quail)
Secreted
1
0
3.9 ± 2.9
61 ± 8
-3.4
Neutrophil gelatinase-associated lipocalin
3fw5
Homo sapiens
Secreted
1
0
2.0 ± 1.2
45 ± 9
-3.1
Outer membrane lipoprotein Blc
1qwd
Escherichia coli
Bact. Gram-neg outer
1
0
3.2 ± 2.0
80 ± 15
-4.6
Prostaglandin-H2 D-isomerase
2ktd
Mus musculus
Endoplasm. reticulum
1
0
0.0 ± 1.4
73 ± 14
-2.2
Retinol binding protein
1kt6
Bos taurus
Secreted
1
0
4.3 ± 1.7
74 ± 12
-4.7
Retinol binding protein
1aqb
Sus scrofa
Secreted
1
0
4.1 ± 1.1
75 ± 14
-4.4
Retinol binding protein
1rbp
Homo sapiens
Secreted
1
0
3.5 ± 0.8
70 ± 6
-5.8
Retinol binding protein, plasma isoform
1iiu
Gallus gallus
Secreted
1
0
1.9 ± 1.8
35 ± 17
-4.4
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA