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|
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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.4. Alpha + Beta monotopic/peripheral
(50 superfamilies)
Superfamily:
2.4.16. Scorpion toxin-like knottin
(11 families)
Family:
2.4.16.02. Arthropod defensins
1.C.47 (TCDB)
PF01097
,
PDBsum
Defensin
Anopheles gambiae (African malaria mosquito)
(
2nz3
, 2e3e, 2e3f, 2e3g, 2ny8, 2ny9)
Crassostrea gigas (Pacific oyster)
(
2b68
)
Defensin ARD1
Archaeoprepona demophon
(
1ozz
, 1p00, 1p0a)
Defensin heliomicin
Heliothis virescens (Tobacco budworm moth)
(
1i2u
, 1i2v)
Defensin MGD-1
Mytilus galloprovincialis (Mediterranean mussel)
(
1fjn
)
Drosomycin
Drosophila melanogaster
(
1myn
)
Nasonin
Nasonia vitripennis (Parasitic wasp)
(
2koz
, 2kp0)
Phormicin
Protophormia terraenovae (Northern blowfly)
(
1ica
)
Sapecin
Sarcophaga peregrina
(
1l4v
)
Termicin
Pseudacanthotermes spiniger
(
1mm0
)
See list of these PDB codes
2.4.16.02. Arthropod defensins
1.C.47 (TCDB)
PF01097
,
PDBsum
(10 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Defensin
2nz3
Anopheles gambiae (African malaria mosquito)
Secreted
1
0
6.7 ± 1.3
84 ± 10
-7.4
Defensin
2b68
Crassostrea gigas (Pacific oyster)
Secreted
1
0
5.8 ± 1.7
28 ± 20
-4.0
Defensin ARD1
1ozz
Archaeoprepona demophon
Secreted
1
0
4.9 ± 1.7
31 ± 17
-7.1
Defensin heliomicin
1i2u
Heliothis virescens (Tobacco budworm moth)
Secreted
1
0
3.4 ± 0.4
59 ± 1
-7.6
Defensin MGD-1
1fjn
Mytilus galloprovincialis (Mediterranean mussel)
Secreted
1
0
1.5 ± 1.4
43 ± 12
-3.0
Drosomycin
1myn
Drosophila melanogaster
Secreted
1
0
4.6 ± 1.2
10 ± 17
-6.0
Nasonin
2koz
Nasonia vitripennis (Parasitic wasp)
Secreted
1
0
2.9 ± 0.9
68 ± 7
-4.6
Phormicin
1ica
Protophormia terraenovae (Northern blowfly)
Secreted
1
0
3.7 ± 2.3
90 ± 23
-5.0
Sapecin
1l4v
Sarcophaga peregrina
Secreted
1
0
5.4 ± 1.5
84 ± 18
-5.1
Termicin
1mm0
Pseudacanthotermes spiniger
Secreted
1
0
4.2 ± 0.5
81 ± 3
-3.3
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA