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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.3. Beta-barrel transmembrane
(26 superfamilies)
Superfamily:
1.3.25. Aerolysin (2 families)
Family:
1.3.25.01.
Aerolysin (n=14,S=14)
1.C.3 (TCDB)
PF07968
,
PDBsum
Alpha-hemolysin
Staphylococcus aureus
(
7ahl
, 3anz, 3m2l, 3m3r, 3m4d, 3m4e)
Gamma-hemolysin, complete channel, hetero-octamer
Staphylococcus aureus
(
3b07
)
Gamma-hemolysin, component B
Staphylococcus aureus
(
3lkf
, 1lkf, 2lkf)
Gamma-hemolysin, heterodimer of components A and B
Staphylococcus aureus
(
2qk7
)
Leukocidin F
Staphylococcus aureus
(
1pvl
)
Necrotic enteritis toxin B
Clostridium perfringens
(
4i0n
)
Necrotic enteritis toxin B, NetB
Clostridium perfringens
(
4h56
)
1.3.25.02.
HlyA hemolysin (n=16,S=16)
1.C.14 (TCDB)
PF12563
,
PDBsum
Cytolysin and hemolysin HlyA Pore-forming toxin
Vibrio cholerae
(
3o44
)
Hemolysin
Vibrio cholerae
(
1xez
)
See list of these PDB codes
1.3.25. Aerolysin (2 families) (9 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.3.25.01.
Necrotic enteritis toxin B, NetB
4h56
Clostridium perfringens
Secreted
7
17
25.2 ± 0.8
0 ± 0
-50.7
1.3.25.01.
Alpha-hemolysin
7ahl
Staphylococcus aureus
Secreted
7
14
23.5 ± 0.9
0 ± 1
-49.3
1.3.25.02.
Cytolysin and hemolysin HlyA Pore-forming toxin
3o44
Vibrio cholerae
Secreted
7
14
24.6 ± 0.0
0 ± 0
-33.1
1.3.25.01.
Gamma-hemolysin, complete channel, hetero-octamer
3b07
Staphylococcus aureus
Secreted
8
16
21.4 ± 1.0
0 ± 0
-32.8
1.3.25.02.
Hemolysin
1xez
Vibrio cholerae
Secreted
1
0
8.2 ± 2.3
19 ± 6
-6.0
1.3.25.01.
Gamma-hemolysin, heterodimer of components A and B
2qk7
Staphylococcus aureus
Secreted
2
0
2.9 ± 2.0
83 ± 11
-5.7
1.3.25.01.
Gamma-hemolysin, component B
3lkf
Staphylococcus aureus
Secreted
1
0
1.7 ± 2.5
51 ± 11
-4.5
1.3.25.01.
Necrotic enteritis toxin B
4i0n
Clostridium perfringens
Secreted
1
0
1.6 ± 2.4
38 ± 7
-4.3
1.3.25.01.
Leukocidin F
1pvl
Staphylococcus aureus
Secreted
1
0
4.0 ± 3.2
47 ± 10
-3.7
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA