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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.2. All beta monotopic/peripheral
(57 superfamilies)
Superfamily:
2.2.39. Snake toxin-like
(2 families)
1.C.74 (TCDB)
Family:
2.2.39.01. Snake venom toxins
C.1.74 (TCDB)
PF00087
,
PDBsum
alpha-Cobratoxin
Naja naja siamensis
(
1ctx
, 1lxg, 1lxh, 1yi5)
Beta-cardiotoxin
Ophiophagus hannah
(
3plc
)
Bucandin
Bungarus candidus (Malayan krait)
(
1f94
, 1ijc)
Cardiotoxin II (cytotoxin II)
Naja naja oxiana
(
1ffj
, 1cb9, 1ccq)
Cardiotoxin III (cytotoxin 3)
Naja atra
(
1h0j
, 1i02, 1xt3, 2bhi, 2crs, 2crt)
Cardiotoxin V4II
Naja mossambica mossambica
(
1cdt
)
Cardiotoxin VI
Naja atra
(
1ug4
)
Cardiotoxin-A1 (cytotoxin 1)
Naja atra
(
2cdx
)
Cardiotoxin-A5
Naja atra
(
1kxi
, 1cvo)
Cytotoxin 1 ( Cardiotoxin gamma)
Naja mossambica pallida
(
1tgx
, 1cxn, 1cxo)
Cytotoxin-1
Naja naja oxiana
(
1rl5
, 1zad)
Erabutoxin b
Laticauda semifasciata (Black-banded sea krait)
(
3ebx
, 1era, 1fra, 1nxb, 6ebx)
Muscarinic m1-toxin1
Dendroaspis angusticeps (Eastern green mamba)
(
2vlw
, 3fev, 3neq)
Muscarinic m1-toxin1, sequence version
Dendroaspis angusticeps (Eastern green mamba)
(
3neq
, 2vlw, 3fev)
Toxin B
Ophiophagus hannah
(
1txa
, 1txb)
See list of these PDB codes
2.2.39.01. Snake venom toxins
C.1.74 (TCDB)
PF00087
,
PDBsum
(15 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Erabutoxin b
3ebx
Laticauda semifasciata (Black-banded sea krait)
Secreted
1
0
1.9 ± 1.4
47 ± 11
-4.3
alpha-Cobratoxin
1ctx
Naja naja siamensis
Secreted
1
0
2.8 ± 1.7
29 ± 18
-4.6
Bucandin
1f94
Bungarus candidus (Malayan krait)
Secreted
1
0
5.0 ± 1.3
61 ± 6
-4.9
Muscarinic m1-toxin1
2vlw
Dendroaspis angusticeps (Eastern green mamba)
Secreted
1
0
3.4 ± 0.9
82 ± 9
-4.9
Toxin B
1txa
Ophiophagus hannah
Secreted
1
0
2.6 ± 1.5
51 ± 16
-5.6
Cytotoxin-1
1rl5
Naja naja oxiana
Secreted
1
0
5.2 ± 2.0
51 ± 16
-5.7
Beta-cardiotoxin
3plc
Ophiophagus hannah
Secreted
1
0
4.6 ± 1.1
73 ± 4
-6.7
Cardiotoxin V4II
1cdt
Naja mossambica mossambica
Secreted
2
0
4.2 ± 1.0
46 ± 14
-6.9
Cardiotoxin-A1 (cytotoxin 1)
2cdx
Naja atra
Secreted
1
0
2.6 ± 1.4
85 ± 17
-6.9
Muscarinic m1-toxin1, sequence version
3neq
Dendroaspis angusticeps (Eastern green mamba)
Secreted
1
0
4.0 ± 0.8
65 ± 5
-7.0
Cytotoxin 1 ( Cardiotoxin gamma)
1tgx
Naja mossambica pallida
Secreted
1
0
6.7 ± 1.0
59 ± 12
-10.0
Cardiotoxin-A5
1kxi
Naja atra
Secreted
1
0
6.3 ± 1.1
69 ± 15
-10.5
Cardiotoxin III (cytotoxin 3)
1h0j
Naja atra
Secreted
1
0
7.1 ± 0.9
59 ± 7
-11.3
Cardiotoxin VI
1ug4
Naja atra
Secreted
1
0
6.4 ± 0.9
62 ± 4
-12.2
Cardiotoxin II (cytotoxin II)
1ffj
Naja naja oxiana
Secreted
1
0
7.9 ± 0.8
56 ± 5
-13.7
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA