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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.1. All alpha monotopic/peripheral
(60 superfamilies)
Superfamily:
2.1.08. Cytochrome c
(2 families)
Family:
2.1.08.01. Monodomain cytochrome c
PF00034
,
PDBsum
Cytochrome c peroxidase
Marinobacter hydrocarbonoclasticus
(
1nml
, 1rz5, 1rz6)
Cytochrome c2
Rhodopseudomonas viridis
(
1co6
, 1cry, 1io3)
Rhodobacter sphaeroides
(
1cxa
, 1cxc, 2cxb)
Cytochrome c551
Pseudomonas stutzeri
(
1cor
)
Pseudomonas aeruginosa
(
451c
, 1dvv, 2pac, 351c)
Cytochrome c552
Nitrosomonas europaea
(
1a8c
, 1a56)
Cytochrome c6
Thermosynechococcus elongatus
(
1c6s
)
Arthrospira maxima
(
1f1f
, 1kib)
Cladophora glomerata
(
1ls9
)
Mitochondrial cytochrome c
Equus caballus
(
1hrc
, 1akk, 1crc, 1fi7, 1fi9, 1giw, 1i5t, 1lc1, 1lc2, 1m60, 1ocd, 1u75, 2frc, 2giw, 2pcb)
Mono-heme c-type cytochrome ScyA
Shewanella putrefaciens
(
1kx7
, 1kx2)
Quinohemoprotein alcohol dehydrogenase ADH IIB
Pseudomonas putida
(
1kv9
)
See list of these PDB codes
2.1.08.01. Monodomain cytochrome c
PF00034
,
PDBsum
(12 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Cytochrome c6
1c6s
Thermosynechococcus elongatus
Thylakoid
1
0
0.4 ± 1.7
89 ± 16
-1.3
Mitochondrial cytochrome c
1hrc
Equus caballus
Mitochon. inner
1
0
2.1 ± 1.0
80 ± 16
-2.6
Cytochrome c6
1ls9
Cladophora glomerata
Thylakoid
1
0
4.1 ± 1.0
70 ± 14
-2.9
Mono-heme c-type cytochrome ScyA
1kx7
Shewanella putrefaciens
Bact. Gram-neg inner
1
0
1.8 ± 1.1
72 ± 12
-3.2
Cytochrome c2
1co6
Rhodopseudomonas viridis
Bact. Gram-neg inner
1
0
1.4 ± 0.7
78 ± 10
-3.3
Cytochrome c6
1f1f
Arthrospira maxima
Thylakoid
1
0
4.8 ± 1.6
80 ± 15
-3.5
Cytochrome c2
1cxa
Rhodobacter sphaeroides
Bact. Gram-neg inner
1
0
2.0 ± 1.2
88 ± 13
-4.3
Cytochrome c552
1a8c
Nitrosomonas europaea
Bact. Gram-neg inner
1
0
2.7 ± 1.0
80 ± 11
-4.7
Cytochrome c551
451c
Pseudomonas aeruginosa
Bact. Gram-neg inner
1
0
1.4 ± 0.9
85 ± 10
-5.4
Quinohemoprotein alcohol dehydrogenase ADH IIB
1kv9
Pseudomonas putida
Bact. Gram-neg outer
1
0
1.7 ± 1.1
77 ± 22
-5.9
Cytochrome c551
1cor
Pseudomonas stutzeri
Bact. Gram-neg inner
1
0
2.6 ± 1.1
73 ± 12
-6.1
Cytochrome c peroxidase
1nml
Marinobacter hydrocarbonoclasticus
Bact. Gram-neg inner
1
0
2.2 ± 0.4
83 ± 0
-7.9
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA