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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
3. Peptides
(4 classes)
Class:
3.1. Alpha-helical peptides
(32 superfamilies)
Superfamily:
3.1.21. Insect antimicrobial peptides (7 families)
Family:
3.1.21.01.
Cecropin
1.C.17 (TCDB)
PF06451
,
PDBsum
Cecropin A (1-8) - magainin 2 (1-12) hybrid peptide
Hyalophora cecropia (Cecropia moth)
(
1d9j
, 1d9l, 1d9m, 1d9o, 1d9p)
Cecropin B analogue
Hyalophora cecropia (Cecropia moth)
(
2igr
)
Moricin
Bombyx mori
(
1kv4
)
Spodoptera litura
(
1x22
)
Manduca sexta
(
2jr8
)
Papiliocin
Papilio xuthus
(
2la2
)
3.1.21.05.
Poneratoxin
Poneratoxin
Paraponera clavata
(
1g92
)
3.1.21.02.
Mastoparan family
1.C.32 (TCDB)
PF08249
,
PDBsum
Mastoparan
Vespa xanthoptera
(
2czp
, 1a13)
Mastoparan-L
Vespula lewisii
(
1d7n
)
3.1.21.03.
Melittin
1.C.18 (TCDB)
PF01372
,
PDBsum
Melittin
Apis mellifera
(
2mlt
, 1bh1, 3qrx)
3.1.21.06.
Stomoxyn
PF11585
,
PDBsum
Spinigerin
Pseudacanthotermes spiniger
(
1zrv
, 1zrw)
Stomoxyn
Stomoxys calcitrans (Stable fly)
(
1zrx
)
3.1.21.07.
Cupiennin
Cupiennin-1a (M-ctenitoxin-Cs1a)
Cupiennius salei (Wandering spider)
(
2k38
)
3.1.21.04.
Oxyopinin
PF08025
,
PDBsum
Oxyopinin-4a
Oxyopes takobius (Lynx spider)
(
2l3i
)
See list of these PDB codes
3.1.21. Insect antimicrobial peptides (7 families) (14 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
3.1.21.03.
Melittin
2mlt
Apis mellifera
Secreted
1
0
15.0 ± 1.0
65 ± 11
-12.0
3.1.21.01.
Moricin
1kv4
Bombyx mori
Secreted
1
0
6.1 ± 0.6
77 ± 14
-10.3
3.1.21.01.
Moricin
1x22
Spodoptera litura
Secreted
1
0
4.4 ± 1.1
70 ± 5
-9.2
3.1.21.05.
Poneratoxin
1g92
Paraponera clavata
Secreted
1
0
22.8 ± 8.5
29 ± 7
-12.9
3.1.21.02.
Mastoparan
2czp
Vespa xanthoptera
Secreted
1
0
5.2 ± 1.6
88 ± 16
-9.8
3.1.21.02.
Mastoparan-L
1d7n
Vespula lewisii
Secreted
1
0
6.5 ± 1.7
82 ± 16
-7.5
3.1.21.01.
Moricin
2jr8
Manduca sexta
Secreted
1
0
5.9 ± 1.6
75 ± 3
-11.5
3.1.21.06.
Stomoxyn
1zrx
Stomoxys calcitrans (Stable fly)
Secreted
1
0
5.7 ± 0.0
80 ± 0
-12.3
3.1.21.06.
Spinigerin
1zrv
Pseudacanthotermes spiniger
Secreted
1
0
2.1 ± 3.4
77 ± 5
-3.9
3.1.21.07.
Cupiennin-1a (M-ctenitoxin-Cs1a)
2k38
Cupiennius salei (Wandering spider)
Secreted
1
0
8.1 ± 4.0
77 ± 9
-5.1
3.1.21.04.
Oxyopinin-4a
2l3i
Oxyopes takobius (Lynx spider)
Secreted
1
0
6.2 ± 1.2
71 ± 10
-6.8
3.1.21.01.
Papiliocin
2la2
Papilio xuthus
Secreted
1
0
7.8 ± 2.0
62 ± 4
-7.4
3.1.21.01.
Cecropin A (1-8) - magainin 2 (1-12) hybrid peptide
1d9j
Hyalophora cecropia (Cecropia moth)
Secreted
1
0
2.3 ± 0.9
90 ± 10
-6.4
3.1.21.01.
Cecropin B analogue
2igr
Hyalophora cecropia (Cecropia moth)
Secreted
1
0
5.1 ± 3.6
87 ± 0
-11.3
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA