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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
3. Peptides
(4 classes)
Class:
3.1. Alpha-helical peptides
(32 superfamilies)
Superfamily:
3.1.04. Peptide fragments of water-soluble proteins (4 families)
Family:
3.1.04.04.
Peptides of huntingtin
Peptide of huntigtin, 1-17
Homo sapiens
(
2ld2
, 2ld0, 3io4, 3lrh)
3.1.04.02.
Prion protein peptides
PF00377
,
PDBsum
Major prion protein, peptide 110-136
Homo sapiens
(
2lbg
)
Major prion protein, peptide 173-195
Homo sapiens
(
2iv5
, 2iv4, 2iv6)
3.1.04.01.
Peptides of STE5 protein
PF11610
,
PDBsum
Protein STE5, peptide 44-67
Saccharomyces cerevisiae
(
2kgn
, 2l4u)
3.1.04.03.
Peptides of viral protein R
1.A.42 (TCDB)
PF00522
,
PDBsum
Viral protein R, peptide 13-33, different strain
Human immunodeficiency virus type 1
(
1fi0
)
Viral protein R, peptide 34-51
Human immunodeficiency virus type 1
(
1kzt
, 1kzs, 1kzv)
Viral protein R, peptide 52-96, dimer, different strain
Human immunodeficiency virus type 1
(
1x9v
, 1ceu, 1esx, 1m8l, 1vpc)
Viral protein R, peptide 59-86
Human immunodeficiency virus type 1
(
1dsk
, 1bde, 1dsj)
See list of these PDB codes
3.1.04. Peptide fragments of water-soluble proteins (4 families) (8 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
3.1.04.03.
Viral protein R, peptide 59-86
1dsk
Human immunodeficiency virus type 1
Eukaryo. plasma
1
0
9.5 ± 0.4
65 ± 6
-11.7
3.1.04.03.
Viral protein R, peptide 13-33, different strain
1fi0
Human immunodeficiency virus type 1
Eukaryo. plasma
1
0
2.7 ± 1.2
88 ± 8
-8.6
3.1.04.03.
Viral protein R, peptide 52-96, dimer, different strain
1x9v
Human immunodeficiency virus type 1
Eukaryo. plasma
1
0
7.2 ± 0.7
86 ± 4
-8.6
3.1.04.02.
Major prion protein, peptide 110-136
2lbg
Homo sapiens
Eukaryo. plasma
1
0
5.0 ± 7.0
86 ± 1
-9.3
3.1.04.02.
Major prion protein, peptide 173-195
2iv5
Homo sapiens
Eukaryo. plasma
1
0
5.3 ± 4.1
83 ± 17
-3.5
3.1.04.01.
Protein STE5, peptide 44-67
2kgn
Saccharomyces cerevisiae
Eukaryo. plasma
1
0
6.4 ± 0.9
84 ± 7
-9.8
3.1.04.03.
Viral protein R, peptide 34-51
1kzt
Human immunodeficiency virus type 1
Eukaryo. plasma
1
0
7.4 ± 0.6
77 ± 7
-10.3
3.1.04.04.
Peptide of huntigtin, 1-17
2ld2
Homo sapiens
Eukaryo. plasma
1
0
4.2 ± 0.6
90 ± 4
-9.3
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA