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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(393 superfamilies)
Families
(668 families)
Species
(539 species)
Localization
(24 types)
All proteins in OPM
(2185 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.4. Alpha + Beta monotopic/peripheral
(50 superfamilies)
Superfamily:
2.4.06. Bet v1-like (4 families)
CL0209
,
PDBsum
Family:
2.4.06.02.
Phosphatidylinositol transfer protein (PITP)
PF02121
,
PDBsum
Phosphatidylinositol transfer protein alpha isoform
Rattus norvegicus
(
1t27
)
Homo sapiens
(
1uw5
)
Mus musculus
(
1kcm
)
Phosphatidylinositol transfer protein beta isoform
Rattus norvegicus
(
2a1l
)
2.4.06.01.
STAR domain
9.B.64 (TCDB)
PF01852
,
PDBsum
Acyl-coenzyme A thioesterase 11
Homo sapiens
(
3fo5
)
Cholesterol-regulated Start protein 4 (StarD4)
Mus musculus
(
1jss
)
Lipid transport protein Mln64 (StARD3)
Homo sapiens
(
1em2
)
Phosphatidylcholine transfer protein
Homo sapiens
(
1ln1
, 1ln2, 1ln3)
STAR-related lipid transfer protein 11, apoprotein (open state)
Homo sapiens
(
2e3m
, 2e3n, 2e3o, 2e3p, 2e3q, 2e3r, 2e3s, 2z9y, 2z9z, 3h3q, 3h3r, 3h3s, 3h3t)
STAR-related lipid transfer protein 11, complex with C18 ceramide
Homo sapiens
(
2e3q
, 2e3m, 2e3n, 2e3o, 2e3p, 2e3s, 2z9y, 2z9z)
StAR-related lipid transfer protein 13
Homo sapiens
(
2pso
)
StAR-related lipid transfer protein 5
Homo sapiens
(
2r55
)
STAR-related lipid transfer protein from bacteria
Xanthomonas axonopodis
(
3qsz
)
Steroidogenic acute regulatory protein, mitochondrial
Homo sapiens
(
3p0l
)
2.4.06.03.
Pathogenesis-related protein Bet v I family
PF00407
,
PDBsum
Class 10 plant pathogenesis-related protein
Lupinus luteus
(
2qim
, 3e85)
S-norcoclaurine synthase
Thalictrum flavum (Yellow meadow rue)
(
2vq5
, 2vne)
2.4.06.04.
Polyketide cyclase/dehydrase and lipid transport
PF03364
,
PDBsum
STAR-related bacterial protein
Thermus thermophilus
(
2d4r
)
Deinococcus radiodurans
(
3ggn
, 2kcz)
Caulobacter crescentus
(
1t17
)
See list of these PDB codes
2.4.06. Bet v1-like (4 families)
CL0209
,
PDBsum
(19 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
2.4.06.01.
Lipid transport protein Mln64 (StARD3)
1em2
Homo sapiens
Endosome
1
0
2.0 ± 1.1
82 ± 12
-5.0
2.4.06.01.
Cholesterol-regulated Start protein 4 (StarD4)
1jss
Mus musculus
Eukaryo. plasma
1
0
2.7 ± 1.4
68 ± 10
-5.2
2.4.06.02.
Phosphatidylinositol transfer protein alpha isoform
1kcm
Mus musculus
Eukaryo. plasma
1
0
5.3 ± 1.4
59 ± 5
-11.0
2.4.06.01.
Phosphatidylcholine transfer protein
1ln1
Homo sapiens
Eukaryo. plasma
1
0
3.8 ± 1.8
53 ± 16
-4.8
2.4.06.04.
STAR-related bacterial protein
1t17
Caulobacter crescentus
Undefined
1
0
3.4 ± 0.7
63 ± 2
-8.1
2.4.06.02.
Phosphatidylinositol transfer protein alpha isoform
1t27
Rattus norvegicus
Eukaryo. plasma
1
0
2.3 ± 1.9
12 ± 12
-4.1
2.4.06.02.
Phosphatidylinositol transfer protein alpha isoform
1uw5
Homo sapiens
Eukaryo. plasma
1
0
4.3 ± 1.5
18 ± 16
-5.4
2.4.06.02.
Phosphatidylinositol transfer protein beta isoform
2a1l
Rattus norvegicus
Eukaryo. plasma
1
0
4.7 ± 1.7
36 ± 17
-4.3
2.4.06.04.
STAR-related bacterial protein
2d4r
Thermus thermophilus
Bact. Gram-neg inner
1
0
6.9 ± 2.2
28 ± 6
-7.1
2.4.06.01.
STAR-related lipid transfer protein 11, apoprotein (open state)
2e3m
Homo sapiens
Golgi
1
0
3.4 ± 1.1
44 ± 12
-6.1
2.4.06.01.
STAR-related lipid transfer protein 11, complex with C18 ceramide
2e3q
Homo sapiens
Golgi
1
0
4.3 ± 2.0
41 ± 17
-3.7
2.4.06.01.
StAR-related lipid transfer protein 13
2pso
Homo sapiens
Eukaryo. plasma
1
0
3.1 ± 4.0
77 ± 27
-4.6
2.4.06.03.
Class 10 plant pathogenesis-related protein
2qim
Lupinus luteus
Secreted
1
0
3.3 ± 1.4
41 ± 3
-3.1
2.4.06.01.
StAR-related lipid transfer protein 5
2r55
Homo sapiens
Eukaryo. plasma
1
0
1.7 ± 1.2
47 ± 19
-4.8
2.4.06.03.
S-norcoclaurine synthase
2vq5
Thalictrum flavum (Yellow meadow rue)
Undefined
4
0
2.6 ± 0.3
90 ± 0
-7.0
2.4.06.01.
Acyl-coenzyme A thioesterase 11
3fo5
Homo sapiens
Endoplasm. reticulum
1
0
2.3 ± 1.4
57 ± 7
-3.9
2.4.06.04.
STAR-related bacterial protein
3ggn
Deinococcus radiodurans
Undefined
1
0
5.2 ± 1.6
53 ± 8
-4.1
2.4.06.01.
Steroidogenic acute regulatory protein, mitochondrial
3p0l
Homo sapiens
Mitochon. outer
1
0
3.0 ± 1.3
76 ± 10
-4.7
2.4.06.01.
STAR-related lipid transfer protein from bacteria
3qsz
Xanthomonas axonopodis
Bact. Gram-neg inner
1
0
3.7 ± 1.4
58 ± 15
-3.0
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA