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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.3. Beta-barrel transmembrane
(26 superfamilies)
Superfamily:
1.3.01. OmpA-OmpF porin family (n=8,S=10) (2 families)
1.B.6 (TCDB)
Family:
1.3.01.01.
OmpA family
PF01389
,
PDBsum
Outer membrane protein A (OMPA)
Escherichia coli
(
1bxw
)
Outer membrane protein A (OMPA), disordered loops
Escherichia coli
(
1qjp
, 1bxw, 1g90, 2ge4, 2jmm, 3nb3)
Outer membrane protein A from Klebsiella
Klebsiella pneumoniae
(
2k0l
)
Transmembrane beta-barrel platform protein
Designed proteins
(
2jmm
)
1.3.01.02.
Enterobacterial Ail/Lom protein
PF06316
,
PDBsum
Attachment invasion locus protein
Yersinia pestis
(
3qra
)
Attachment invasion locus protein, complex with the heparin analogue
Yersinia pestis
(
3qrc
)
Outer membrane protein X (OMPX)
Escherichia coli
(
1qj8
, 1orm, 1q9f, 1q9g, 1qj9, 2m06, 2m07)
See list of these PDB codes
1.3.01. OmpA-OmpF porin family (n=8,S=10) (2 families)
1.B.6 (TCDB)
(7 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.3.01.01.
Outer membrane protein A (OMPA)
1bxw
Escherichia coli
Bact. Gram-neg outer
1
8
25.4 ± 1.9
5 ± 1
-35.6
1.3.01.02.
Outer membrane protein X (OMPX)
1qj8
Escherichia coli
Bact. Gram-neg outer
1
8
23.6 ± 2.8
12 ± 5
-30.7
1.3.01.01.
Outer membrane protein A (OMPA), disordered loops
1qjp
Escherichia coli
Bact. Gram-neg outer
1
8
25.4 ± 1.5
11 ± 1
-29.5
1.3.01.01.
Transmembrane beta-barrel platform protein
2jmm
Designed proteins
Undefined
1
8
23.9 ± 1.3
4 ± 4
-32.3
1.3.01.01.
Outer membrane protein A from Klebsiella
2k0l
Klebsiella pneumoniae
Bact. Gram-neg outer
1
8
24.3 ± 2.3
18 ± 6
-26.8
1.3.01.02.
Attachment invasion locus protein
3qra
Yersinia pestis
Bact. Gram-neg outer
1
8
25.2 ± 1.4
14 ± 7
-32.2
1.3.01.02.
Attachment invasion locus protein, complex with the heparin analogue
3qrc
Yersinia pestis
Bact. Gram-neg outer
1
8
24.6 ± 1.2
7 ± 5
-31.6
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA