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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.1. All alpha monotopic/peripheral
(60 superfamilies)
Superfamily:
2.1.29. Alpha-helical (HDL) apolipoproteins (6 families)
Family:
2.1.29.01.
Apolipoprotein A1/A4/E
PF01442
,
PDBsum
Apolipoprotein A-I
Homo sapiens
(
2a01
, 1av1, 3j00, 3k2s, 3r2p)
Apolipoprotein A-I, alternative structure of C-terminal domain
Homo sapiens
(
3r2p
, 1av1, 2a01, 3j00, 3k2s)
Apolipoprotein E
Mus musculus
(
1ya9
)
Homo sapiens
(
2l7b
, 1b68, 1bz4, 1ea8, 1gs9, 1h7i, 1le2, 1le4, 1lpe, 1nfn, 1nfo, 1or2, 1or3, 2kc3, 2kny)
2.1.29.02.
Apolipoprotein A-II
PF04711
,
PDBsum
Apolipoprotein A-II
Homo sapiens
(
2ou1
, 1l6l)
Apolipoprotein A-II, different conformation
Homo sapiens
(
1l6l
, 2ou1)
2.1.29.05.
Apolipoprotein C-III
PF05778
,
PDBsum
Apolipoprotein C-III
Homo sapiens
(
2jq3
)
2.1.29.06.
Perilipin
PF03036
,
PDBsum
Perilipin-3
Mus musculus
(
1szi
)
2.1.29.03.
Apolipoprotein C-I
PF01442
,
PDBsum
Apolipoprotein C-I
Papio hamadryas (Hamadryas baboon)
(
1eze
)
Apolipoprotein C-I, peptide 33-50
Homo sapiens
(
1ale
, 1ioj, 1opp)
Apolipoprotein C-I, peptide 61-79
Homo sapiens
(
1alf
, 1ioj, 1opp)
2.1.29.04.
Apolipoprotein C-II
PF05355
,
PDBsum
Apolipoprotein C-II
Homo sapiens
(
1i5j
, 1by6, 1o8t, 1soh)
See list of these PDB codes
2.1.29. Alpha-helical (HDL) apolipoproteins (6 families) (12 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
2.1.29.01.
Apolipoprotein A-I
2a01
Homo sapiens
Secreted
1
0
4.8 ± 1.2
63 ± 11
-6.5
2.1.29.01.
Apolipoprotein A-I, alternative structure of C-terminal domain
3r2p
Homo sapiens
Secreted
2
0
1.7 ± 1.6
87 ± 3
-4.1
2.1.29.02.
Apolipoprotein A-II
2ou1
Homo sapiens
Secreted
2
0
2.7 ± 1.2
87 ± 2
-17.7
2.1.29.02.
Apolipoprotein A-II, different conformation
1l6l
Homo sapiens
Secreted
2
0
3.9 ± 1.2
65 ± 8
-10.6
2.1.29.03.
Apolipoprotein C-I
1eze
Papio hamadryas (Hamadryas baboon)
Secreted
1
0
4.6 ± 0.2
89 ± 3
-9.9
2.1.29.03.
Apolipoprotein C-I, peptide 33-50
1ale
Homo sapiens
Secreted
1
0
4.9 ± 1.0
72 ± 4
-7.8
2.1.29.03.
Apolipoprotein C-I, peptide 61-79
1alf
Homo sapiens
Secreted
1
0
4.1 ± 0.5
86 ± 3
-9.4
2.1.29.04.
Apolipoprotein C-II
1i5j
Homo sapiens
Secreted
1
0
4.4 ± 2.3
42 ± 3
-9.9
2.1.29.05.
Apolipoprotein C-III
2jq3
Homo sapiens
Secreted
1
0
2.9 ± 1.4
85 ± 0
-5.6
2.1.29.01.
Apolipoprotein E
1ya9
Mus musculus
Secreted
1
0
1.6 ± 1.4
85 ± 11
-4.1
2.1.29.01.
Apolipoprotein E
2l7b
Homo sapiens
Secreted
1
0
2.5 ± 1.0
73 ± 8
-4.9
2.1.29.06.
Perilipin-3
1szi
Mus musculus
Endosome
1
0
2.4 ± 2.3
61 ± 6
-4.1
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA