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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.3. Alpha/Beta monotopic/peripheral
(33 superfamilies)
Superfamily:
2.3.13. Thioredoxin-like (7 families)
CL0172
,
PDBsum
Family:
2.3.13.02.
Phosducin
PF02114
,
PDBsum
Phosducin/Transducin beta-gamma complex, conformation 1
Bos taurus
(
1a0r
)
Phosducin/Transducin beta-gamma complex, conformation 2
Rattus norvegicus
(
2trc
, 1b9x, 1b9y)
Phosducin/Transducin beta-gamma complex, conformation 3
Rattus norvegicus
(
1b9x
, 1b9y, 2trc)
2.3.13.01.
Glutathione S-transferase
PF00462
,
PDBsum
Microsomal prostaglandin E synthase 2
Macaca fascicularis
(
1z9h
, 2pbj)
2.3.13.03.
DSBA-like thioredoxin domain
PF01323
,
PDBsum
Thiol-disulfide interchange protein DsbA
Escherichia coli
(
1u3a
)
2.3.13.04.
Glutathione peroxidase
PF00255
,
PDBsum
Glutathione peroxidase-like protein
Trypanosoma brucei
(
2vup
)
2.3.13.05.
AhpC/TSA family
PF00578
,
PDBsum
Putative peroxiredoxin Rv2238c/MT2298
Mycobacterium tuberculosis
(
1xvw
, 1xxu)
2.3.13.06.
Glutathione S-transferase
PF02798
,
PDBsum
Glutathione transferase GST1-4
Anopheles dirus
(
3g7j
, 1jlw, 3f63, 3f6d, 3g7i)
Stringent starvation protein A
Pseudomonas putida
(
3mdk
)
2.3.13.07.
Intracellular chloride channel (CLIC)
1.A.12 (TCDB)
PF13417
,
PDBsum
Chloride intracellular channel protein 1
Homo sapiens
(
1rk4
)
See list of these PDB codes
2.3.13. Thioredoxin-like (7 families)
CL0172
,
PDBsum
(10 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
2.3.13.03.
Thiol-disulfide interchange protein DsbA
1u3a
Escherichia coli
Bact. Gram-neg inner
1
0
2.2 ± 1.4
86 ± 8
-4.2
2.3.13.06.
Stringent starvation protein A
3mdk
Pseudomonas putida
Undefined
2
0
4.8 ± 0.1
89 ± 0
-5.5
2.3.13.05.
Putative peroxiredoxin Rv2238c/MT2298
1xvw
Mycobacterium tuberculosis
Undefined
1
0
4.6 ± 1.0
20 ± 5
-7.0
2.3.13.02.
Phosducin/Transducin beta-gamma complex, conformation 3
1b9x
Rattus norvegicus
Eukaryo. plasma
3
0
1.0 ± 1.6
49 ± 12
-3.9
2.3.13.02.
Phosducin/Transducin beta-gamma complex, conformation 2
2trc
Rattus norvegicus
Eukaryo. plasma
3
0
2.2 ± 1.0
62 ± 10
-4.9
2.3.13.02.
Phosducin/Transducin beta-gamma complex, conformation 1
1a0r
Bos taurus
Eukaryo. plasma
3
0
2.3 ± 1.0
50 ± 4
-7.4
2.3.13.01.
Microsomal prostaglandin E synthase 2
1z9h
Macaca fascicularis
Golgi
2
0
4.8 ± 0.5
90 ± 4
-15.7
2.3.13.06.
Glutathione transferase GST1-4
3g7j
Anopheles dirus
Undefined
2
0
3.1 ± 0.3
88 ± 1
-7.6
2.3.13.04.
Glutathione peroxidase-like protein
2vup
Trypanosoma brucei
Undefined
1
0
3.0 ± 1.7
84 ± 7
-4.1
2.3.13.07.
Chloride intracellular channel protein 1
1rk4
Homo sapiens
Nuclear outer
1
0
3.0 ± 1.0
40 ± 5
-5.5
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA