UNIVERSITY OF MICHIGAN
|
COLLEGE OF PHARMACY
|
MOSBERG LAB
PDB ID or protein name
HOME
ABOUT OPM
DOWNLOAD OPM FILES
CONTACT US
PPM SERVER
LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(393 superfamilies)
Families
(668 families)
Species
(539 species)
Localization
(24 types)
All proteins in OPM
(2185 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.3. Beta-barrel transmembrane
(27 superfamilies)
Superfamily:
1.3.24. Outer Membrane Factor (OMF) (n=12,S=18) trimeric (1 family)
1.B.17 (TCDB)
PF02321
,
PDBsum
Family:
1.3.24.01.
TolC-like proteins
1.B.17 (TCDB)
PF02321
,
PDBsum
Cation efflux system protein CusC
Escherichia coli
(
3pik
)
Drug-Discharge Outer Membrane Protein, OprM
Pseudomonas aeruginosa
(
1wp1
, 3d5k)
Multidrug Resistance (VceC) protein
Vibrio cholerae
(
1yc9
)
Outer membrane protein TolC
Escherichia coli
(
1ek9
, 1tqq, 2vdd, 2vde, 2wmz, 2xmn)
Outer membrane protein TolC, mutant, open conformation 1
Escherichia coli
(
2wmz
)
Outer membrane protein TolC, mutant, open conformation 2
Escherichia coli
(
2vde
)
Outer membrane protein TolC, mutant, open conformation 3
Escherichia coli
(
2vdd
)
Outer membrane protein TolC, mutant, open conformation 4
Escherichia coli
(
2xmn
)
See list of these PDB codes
1.3.24. Outer Membrane Factor (OMF) (n=12,S=18) trimeric (1 family)
1.B.17 (TCDB)
PF02321
,
PDBsum
(8 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.3.24.01.
Outer membrane protein TolC, mutant, open conformation 4
2xmn
Escherichia coli
Bact. Gram-neg outer
3
12
23.6 ± 1.4
0 ± 0
-50.5
1.3.24.01.
Outer membrane protein TolC, mutant, open conformation 3
2vdd
Escherichia coli
Bact. Gram-neg outer
3
12
24.4 ± 1.2
0 ± 0
-57.7
1.3.24.01.
Outer membrane protein TolC, mutant, open conformation 2
2vde
Escherichia coli
Archaebac.
3
12
24.4 ± 1.2
0 ± 0
-57.4
1.3.24.01.
Outer membrane protein TolC, mutant, open conformation 1
2wmz
Escherichia coli
Bact. Gram-neg outer
3
12
24.4 ± 0.8
0 ± 0
-52.8
1.3.24.01.
Outer membrane protein TolC
1ek9
Escherichia coli
Bact. Gram-neg outer
3
12
24.6 ± 1.4
0 ± 2
-56.1
1.3.24.01.
Multidrug Resistance (VceC) protein
1yc9
Vibrio cholerae
Bact. Gram-neg outer
3
12
24.6 ± 1.0
0 ± 0
-62.2
1.3.24.01.
Drug-Discharge Outer Membrane Protein, OprM
1wp1
Pseudomonas aeruginosa
Bact. Gram-neg outer
3
12
24.7 ± 1.2
0 ± 0
-64.0
1.3.24.01.
Cation efflux system protein CusC
3pik
Escherichia coli
Bact. Gram-neg outer
3
12
24.3 ± 1.2
1 ± 0
-33.8
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA