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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.4. Alpha + Beta monotopic/peripheral
(50 superfamilies)
Superfamily:
2.4.16. Scorpion toxin-like knottin
(11 families)
Family:
2.4.16.04. Plant defensins
1.C.45 (TCDB)
PF00304
,
PDBsum
Antifungal protein 1
Raphanus sativus
(
1ayj
)
Defensin
Pachyrhizus erosus
(
3psm
)
Vigna radiata (Mung bean)
(
1ti5
)
Defensin 1
Pisum sativum
(
1jkz
)
Defensin 2 (PDF1)
Vigna radiata (Mung bean)
(
2gl1
)
Defensin-like protein
Nicotiana tabacum
(
1mr4
)
Pentadiplandra brazzeana
(
1brz
, 2brz, 2kgq, 2kyq)
Defensin-like protein 1
Triticum aestivum
(
1gps
)
Hordeum vulgare
(
1gpt
)
Defensin-like protein 195
Arabidopsis thaliana
(
1jxc
)
Floral defensin-like protein 1
Petunia hybrida
(
1n4n
)
See list of these PDB codes
2.4.16.04. Plant defensins
1.C.45 (TCDB)
PF00304
,
PDBsum
(11 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Antifungal protein 1
1ayj
Raphanus sativus
Secreted
1
0
11.0 ± 1.9
39 ± 19
-7.4
Floral defensin-like protein 1
1n4n
Petunia hybrida
Secreted
1
0
1.8 ± 0.8
6 ± 9
-3.8
Defensin 1
1jkz
Pisum sativum
Secreted
1
0
3.5 ± 1.6
8 ± 19
-5.4
Defensin 2 (PDF1)
2gl1
Vigna radiata (Mung bean)
Secreted
1
0
2.8 ± 0.6
6 ± 4
-5.7
Defensin-like protein 195
1jxc
Arabidopsis thaliana
Secreted
1
0
4.0 ± 1.5
21 ± 20
-3.9
Defensin-like protein
1brz
Pentadiplandra brazzeana
Secreted
1
0
1.2 ± 1.2
83 ± 10
-3.6
Defensin-like protein 1
1gps
Triticum aestivum
Secreted
1
0
3.4 ± 1.3
22 ± 9
-3.9
Defensin-like protein 1
1gpt
Hordeum vulgare
Secreted
1
0
3.1 ± 1.6
28 ± 18
-2.0
Defensin-like protein
1mr4
Nicotiana tabacum
Secreted
1
0
4.2 ± 1.8
59 ± 11
-3.0
Defensin
3psm
Pachyrhizus erosus
Secreted
1
0
4.1 ± 1.8
32 ± 8
-5.4
Defensin
1ti5
Vigna radiata (Mung bean)
Secreted
1
0
1.9 ± 2.4
62 ± 16
-3.0
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA