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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.3. Alpha/Beta monotopic/peripheral
(33 superfamilies)
Superfamily:
2.3.14. CRAL/TRIO domain
(2 families)
Family:
2.3.14.01. CRAL/TRIO domain
PF00650
,
PDBsum
Alpha-tocopherol transfer protein, closed state with ligand
Homo sapiens
(
1r5l
, 1oip)
Alpha-tocopherol transfer protein, open state
Homo sapiens
(
1oiz
)
Mus musculus
(
3w68
, 3w67)
Neurofibromin
Homo sapiens
(
2d4q
, 2e2x)
Phosphatidylinositol transfer protein PDR16
Saccharomyces cerevisiae
(
4fmm
)
Phosphatidylinositol transfer protein sec14p
Saccharomyces cerevisiae
(
1aua
)
Retinaldehyde-binding protein 1, closed state
Homo sapiens
(
3hx3
, 1xgg, 1xgh)
Retinaldehyde-binding protein 1, closed state, more complete structure
Homo sapiens
(
3hy5
)
SEC14-like protein 2 (supernatant factor protein)
Homo sapiens
(
1o6u
, 1olm)
Yeast Sec14 Homolog Sfh1 (YKL091C)
Saccharomyces cerevisiae
(
3b7n
, 3b74, 3b7q, 3b7z, 3q8g)
See list of these PDB codes
2.3.14.01. CRAL/TRIO domain
PF00650
,
PDBsum
(10 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Yeast Sec14 Homolog Sfh1 (YKL091C)
3b7n
Saccharomyces cerevisiae
Nuclear outer
1
0
2.9 ± 1.5
65 ± 18
-5.8
Phosphatidylinositol transfer protein PDR16
4fmm
Saccharomyces cerevisiae
Endoplasm. reticulum
1
0
9.9 ± 2.6
78 ± 19
-13.9
Phosphatidylinositol transfer protein sec14p
1aua
Saccharomyces cerevisiae
Golgi
1
0
8.8 ± 1.1
75 ± 10
-14.3
Alpha-tocopherol transfer protein, open state
3w68
Mus musculus
Golgi
1
0
6.0 ± 0.6
70 ± 2
-13.8
SEC14-like protein 2 (supernatant factor protein)
1o6u
Homo sapiens
Eukaryo. plasma
1
0
3.6 ± 1.4
62 ± 14
-4.9
Neurofibromin
2d4q
Homo sapiens
Eukaryo. plasma
1
0
1.6 ± 2.0
34 ± 19
-3.3
Retinaldehyde-binding protein 1, closed state
3hx3
Homo sapiens
Eukaryo. plasma
1
0
1.2 ± 2.9
77 ± 32
-4.8
Retinaldehyde-binding protein 1, closed state, more complete structure
3hy5
Homo sapiens
Eukaryo. plasma
1
0
2.0 ± 3.9
55 ± 17
-4.5
Alpha-tocopherol transfer protein, closed state with ligand
1r5l
Homo sapiens
Golgi
1
0
4.3 ± 1.0
77 ± 9
-11.8
Alpha-tocopherol transfer protein, open state
1oiz
Homo sapiens
Golgi
1
0
8.1 ± 1.0
64 ± 10
-17.6
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA