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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.1. Alpha-helical polytopic
(72 superfamilies)
Superfamily:
1.1.12. Voltage-gated channel like
(3 families)
1.A.1 (TCDB)
Family:
1.1.12.02. Inward rectifier potassium channels
1.A.2 (TCDB)
PF01007
,
PDBsum
G protein-activated inward rectifier potassium channel 2 (GIRK2, Kir3.2)
Mus musculus
(
3sya
, 3syc, 3syo, 3syp)
G protein-activated inward rectifier potassium channel 2, diff. conf.
Mus musculus
(
3syq
)
Kir3.1-prokaryotic Kir channel chimera
Burkholderia xenovorans
(
2qks
)
Potassium channel Kir 2.2
Gallus gallus
(
3jyc
, 3spj)
Potassium channel Kir 2.2, complex with pyrophosphate lipid
Gallus gallus
(
3spc
)
Potassium channel Kir 2.2, complex with inositol lipid
Gallus gallus
(
3spg
, 3sph, 3spi)
Potassium channel Kirbac1.1, closed state
Burkholderia pseudomallei
(
1p7b
)
Potassium channel Kirbac1.1, closed state, refined
Burkholderia pseudomallei
(
2wll
)
Potassium channel Kirbac3.1, closed conformation
Magnetospirillum magnetotacticum
(
2wlk
, 1xl4, 1xl6, 2wlj, 2x6c)
Potassium channel Kirbac3.1, open conformation
Magnetospirillum magnetotacticum
(
3zrs
, 2wlh, 2wli, 2wlm, 2wln, 2wlo, 2x6a, 2x6b)
See list of these PDB codes
1.1.12.02. Inward rectifier potassium channels
1.A.2 (TCDB)
PF01007
,
PDBsum
(10 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Potassium channel Kirbac1.1, closed state
1p7b
Burkholderia pseudomallei
Bact. Gram-neg inner
4
12
33.1 ± 1.3
0 ± 0
-111.9
Potassium channel Kir 2.2, complex with inositol lipid
3spg
Gallus gallus
Eukaryo. plasma
4
8
30.8 ± 1.2
0 ± 0
-109.1
Kir3.1-prokaryotic Kir channel chimera
2qks
Burkholderia xenovorans
Bact. Gram-neg inner
4
12
30.5 ± 1.4
0 ± 1
-88.6
G protein-activated inward rectifier potassium channel 2, diff. conf.
3syq
Mus musculus
Eukaryo. plasma
4
8
31.6 ± 0.6
0 ± 0
-107.9
Potassium channel Kirbac1.1, closed state, refined
2wll
Burkholderia pseudomallei
Bact. Gram-neg inner
4
8
33.4 ± 2.4
0 ± 0
-109.1
Potassium channel Kirbac3.1, closed conformation
2wlk
Magnetospirillum magnetotacticum
Bact. Gram-neg inner
4
8
29.8 ± 2.4
0 ± 0
-78.7
Potassium channel Kirbac3.1, open conformation
3zrs
Magnetospirillum magnetotacticum
Bact. Gram-neg inner
4
12
30.0 ± 1.1
0 ± 0
-85.9
Potassium channel Kir 2.2, complex with pyrophosphate lipid
3spc
Gallus gallus
Eukaryo. plasma
4
8
30.6 ± 1.2
0 ± 0
-120.3
Potassium channel Kir 2.2
3jyc
Gallus gallus
Eukaryo. plasma
4
12
30.5 ± 1.4
0 ± 1
-119.9
G protein-activated inward rectifier potassium channel 2 (GIRK2, Kir3.2)
3sya
Mus musculus
Eukaryo. plasma
4
12
34.8 ± 0.7
0 ± 0
-145.5
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA