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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.2. Alpha-helical bitopic
(42 superfamilies)
Superfamily:
1.2.03. Immunoglobulin superfamily (8 families)
CL0011
,
PDBsum
Family:
1.2.03.03.
Myelin protein
PF10570
,
PDBsum
Myelin protein P0
Homo sapiens
(
3oai
)
Rattus norvegicus
(
1neu
)
1.2.03.02.
T-cell immunoglobulin and mucin domain-containing (TIM) protein
Cytotoxic T-lymphocyte protein 4
Mus musculus
(
1dqt
)
Hepatitis A virus cellular receptor 1 homolog
Mus musculus
(
2or8
)
Hepatitis A virus cellular receptor 2 homolog
Mus musculus
(
3kaa
, 2oyp)
Sialoadhesin
Mus musculus
(
1url
, 1od7, 1od9, 1oda, 1qfo, 1qfp, 2bve)
SLAM family member 6
Homo sapiens
(
2if7
)
T-cell immunoglobulin and mucin domain-containing protein 2
Mus musculus
(
2or7
)
T-cell immunoglobulin and mucin domain-containing protein 4
Mus musculus
(
3bib
, 3bi9, 3bia)
T-cell-specific surface glycoprotein CD28
Homo sapiens
(
1yjd
)
1.2.03.01.
T-cell surface glycoprotein CD4
PF12104
,
PDBsum
T-cell surface glycoprotein CD4
Homo sapiens
(
2klu
)
1.2.03.04.
Leukocyte immuniglobulin-like receptor
Leukocyte immunoglobulin-like receptor subfamily B member 4
Homo sapiens
(
3p2t
)
1.2.03.05.
Type I cytokine receptor
PF09067
,
PDBsum
Prolactin receptor
Homo sapiens
(
3nce
, 1bp3, 1rw5, 2q98, 3d48, 3ew3, 3mzg, 3n06, 3n0p, 3ncb, 3ncc, 3ncf, 3npz)
1.2.03.06.
Cadherin
PF00028
,
PDBsum
1.2.03.07.
Netrin receptor family
Cell adhesion molecule complex
Homo sapiens
(
3n1f
, 3d1m, 3k7g, 3k7h, 3k7i, 3k7j, 3n1m, 3n1o, 3n1p, 3n1q)
Netrin receptor UNC5B
Rattus norvegicus
(
3g5b
)
See list of these PDB codes
1.2.03. Immunoglobulin superfamily (8 families)
CL0011
,
PDBsum
(15 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.2.03.01.
T-cell surface glycoprotein CD4
2klu
Homo sapiens
Eukaryo. plasma
1
1
31.8 ± 2.6
12 ± 7
-23.7
1.2.03.02.
T-cell immunoglobulin and mucin domain-containing protein 4
3bib
Mus musculus
Eukaryo. plasma
1
0
3.2 ± 1.9
41 ± 7
-4.6
1.2.03.02.
T-cell-specific surface glycoprotein CD28
1yjd
Homo sapiens
Eukaryo. plasma
1
0
4.5 ± 0.6
46 ± 11
-3.6
1.2.03.02.
Hepatitis A virus cellular receptor 2 homolog
3kaa
Mus musculus
Eukaryo. plasma
1
0
2.8 ± 2.0
55 ± 16
-5.5
1.2.03.02.
T-cell immunoglobulin and mucin domain-containing protein 2
2or7
Mus musculus
Eukaryo. plasma
1
0
0.9 ± 0.7
54 ± 6
-3.3
1.2.03.07.
Netrin receptor UNC5B
3g5b
Rattus norvegicus
Eukaryo. plasma
1
0
1.9 ± 2.5
90 ± 14
-8.5
1.2.03.02.
Hepatitis A virus cellular receptor 1 homolog
2or8
Mus musculus
Eukaryo. plasma
1
0
4.2 ± 2.4
51 ± 16
-3.9
1.2.03.03.
Myelin protein P0
3oai
Homo sapiens
Eukaryo. plasma
1
0
2.2 ± 1.2
72 ± 6
-5.8
1.2.03.03.
Myelin protein P0
1neu
Rattus norvegicus
Eukaryo. plasma
1
0
5.4 ± 1.8
70 ± 8
-6.6
1.2.03.04.
Leukocyte immunoglobulin-like receptor subfamily B member 4
3p2t
Homo sapiens
Eukaryo. plasma
1
0
1.7 ± 0.4
84 ± 5
-5.9
1.2.03.02.
Cytotoxic T-lymphocyte protein 4
1dqt
Mus musculus
Eukaryo. plasma
1
0
3.4 ± 1.6
64 ± 4
-5.3
1.2.03.02.
Sialoadhesin
1url
Mus musculus
Eukaryo. plasma
2
0
3.7 ± 1.8
83 ± 12
-4.0
1.2.03.07.
Cell adhesion molecule complex
3n1f
Homo sapiens
Eukaryo. plasma
2
0
5.2 ± 0.9
59 ± 4
-5.7
1.2.03.05.
Prolactin receptor
3nce
Homo sapiens
Eukaryo. plasma
2
0
3.4 ± 1.5
68 ± 2
-5.7
1.2.03.02.
SLAM family member 6
2if7
Homo sapiens
Eukaryo. plasma
3
0
2.0 ± 3.3
88 ± 11
-7.1
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA