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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.1. Alpha-helical polytopic
(72 superfamilies)
Superfamily:
1.1.14. Major Intrinsic Protein (MIP)/FNT superfamily (2 families)
1.A.8 (TCDB)
Family:
1.1.14.01.
Major intrinsic protein (MIP) family
1.A.8 (TCDB)
PF00230
,
PDBsum
Aquaglyceroporin
Plasmodium falciparum
(
3c02
)
Aquaporin AqpM
Methanobacterium thermoautotrophicum
(
2f2b
, 2evu)
Archaeoglobus fulgidus
(
3ne2
)
Aquaporin AQY1
Pichia pastoris
(
2w2e
, 2w1p)
Aquaporin Sopip2, closed state
Spinacia oleracea
(
1z98
, 3cn6)
Aquaporin Sopip2, closed state 2
Spinacia oleracea
(
3cll
, 3cn5)
Aquaporin Sopip2, open state
Spinacia oleracea
(
2b5f
)
Aquaporin Z
Escherichia coli
(
1rc2
, 2abm, 2o9d, 2o9e, 2o9f, 2o9g, 3nk5, 3nka, 3nkc)
Aquaporin Z2
Agrobacterium tumefaciens
(
3llq
)
Aquaporin-0
Ovis aries
(
2b6o
, 1sor)
Bos taurus
(
1ymg
, 2b6p, 2c32)
Aquaporin-0, alternative packing with lipids
Ovis aries
(
3m9i
)
Aquaporin-0, open state
Bos taurus
(
2b6p
)
Aquaporin-1
Bos taurus
(
1j4n
)
Homo sapiens
(
1h6i
, 1fqy, 1ih5)
Aquaporin-4
Rattus norvegicus
(
2d57
, 3iyz)
Homo sapiens
(
3gd8
)
Aquaporin-4, different conformation of loops with lipids
Rattus norvegicus
(
2zz9
)
Aquaporin-5
Homo sapiens
(
3d9s
)
Glycerol uptake facilitator
Escherichia coli
(
1ldf
, 1fx8, 1lda, 1ldi)
1.1.14.02.
Formate/Nitrite transporter (FNT) family
2.A.44 (TCDB)
PF01226
,
PDBsum
Formate transporter
Salmonella enterica
(
3q7k
)
Formate transporter 1, FocA
Vibrio cholerae
(
3kly
, 3klz)
Escherichia coli
(
3kcu
, 3kcv)
Formate/nitrite transporter
Clostridium difficile
(
3tdp
, 3tdo, 3tdr, 3tds, 3tdx, 3te0, 3te1, 3te2)
Nitrite transporter NirC
Salmonella typhimurium
(
4fc4
)
See list of these PDB codes
1.1.14. Major Intrinsic Protein (MIP)/FNT superfamily (2 families)
1.A.8 (TCDB)
(25 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.1.14.01.
Aquaporin AqpM
2f2b
Methanobacterium thermoautotrophicum
Archaebac.
4
32
29.0 ± 0.8
0 ± 0
-129.9
1.1.14.01.
Aquaglyceroporin
3c02
Plasmodium falciparum
Eukaryo. plasma
4
32
30.4 ± 1.3
0 ± 0
-137.4
1.1.14.01.
Aquaporin AqpM
3ne2
Archaeoglobus fulgidus
Archaebac.
4
24
31.2 ± 1.3
0 ± 0
-143.5
1.1.14.01.
Aquaporin-0, open state
2b6p
Bos taurus
Eukaryo. plasma
4
32
31.1 ± 1.5
0 ± 1
-130.0
1.1.14.01.
Aquaporin-4
2d57
Rattus norvegicus
Eukaryo. plasma
4
32
29.8 ± 1.1
0 ± 0
-126.2
1.1.14.01.
Aquaporin Z
1rc2
Escherichia coli
Bact. Gram-neg inner
4
32
29.7 ± 1.3
0 ± 0
-118.7
1.1.14.01.
Aquaporin-0
2b6o
Ovis aries
Eukaryo. plasma
4
32
31.8 ± 1.4
0 ± 0
-143.3
1.1.14.01.
Aquaporin-5
3d9s
Homo sapiens
Eukaryo. plasma
4
32
30.3 ± 0.9
0 ± 0
-133.3
1.1.14.01.
Glycerol uptake facilitator
1ldf
Escherichia coli
Bact. Gram-neg inner
4
32
30.1 ± 0.9
0 ± 0
-147.9
1.1.14.01.
Aquaporin-1
1j4n
Bos taurus
Eukaryo. plasma
4
32
31.8 ± 1.0
0 ± 0
-129.2
1.1.14.01.
Aquaporin-4
3gd8
Homo sapiens
Eukaryo. plasma
4
32
29.8 ± 1.1
0 ± 1
-122.9
1.1.14.01.
Aquaporin-0
1ymg
Bos taurus
Eukaryo. plasma
4
32
31.3 ± 1.2
0 ± 0
-138.4
1.1.14.01.
Aquaporin AQY1
2w2e
Pichia pastoris
Eukaryo. plasma
4
32
30.2 ± 0.8
0 ± 0
-131.7
1.1.14.01.
Aquaporin-1
1h6i
Homo sapiens
Eukaryo. plasma
4
32
30.8 ± 1.1
0 ± 0
-135.6
1.1.14.01.
Aquaporin-4, different conformation of loops with lipids
2zz9
Rattus norvegicus
Eukaryo. plasma
4
28
29.5 ± 0.7
0 ± 0
-115.6
1.1.14.01.
Aquaporin Z2
3llq
Agrobacterium tumefaciens
Bact. Gram-neg inner
4
32
29.8 ± 0.6
0 ± 0
-134.5
1.1.14.01.
Aquaporin Sopip2, closed state
1z98
Spinacia oleracea
Eukaryo. plasma
4
32
28.1 ± 2.2
0 ± 0
-117.2
1.1.14.01.
Aquaporin-0, alternative packing with lipids
3m9i
Ovis aries
Eukaryo. plasma
4
24
27.6 ± 1.4
0 ± 0
-139.0
1.1.14.01.
Aquaporin Sopip2, open state
2b5f
Spinacia oleracea
Eukaryo. plasma
4
32
29.4 ± 1.1
2 ± 2
-113.0
1.1.14.01.
Aquaporin Sopip2, closed state 2
3cll
Spinacia oleracea
Eukaryo. plasma
4
27
29.8 ± 0.7
0 ± 0
-127.8
1.1.14.02.
Nitrite transporter NirC
4fc4
Salmonella typhimurium
Bact. Gram-neg inner
5
35
33.8 ± 0.0
0 ± 0
-112.5
1.1.14.02.
Formate/nitrite transporter
3tdp
Clostridium difficile
Bact. Gram-pos plas.
5
30
28.4 ± 1.9
0 ± 0
-161.3
1.1.14.02.
Formate transporter 1, FocA
3kly
Vibrio cholerae
Bact. Gram-neg inner
5
35
31.4 ± 0.5
1 ± 0
-188.2
1.1.14.02.
Formate transporter 1, FocA
3kcu
Escherichia coli
Bact. Gram-neg inner
5
35
29.9 ± 0.7
0 ± 0
-160.9
1.1.14.02.
Formate transporter
3q7k
Salmonella enterica
Bact. Gram-neg inner
5
30
28.6 ± 0.0
0 ± 0
-148.8
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA