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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(393 superfamilies)
Families
(668 families)
Species
(539 species)
Localization
(24 types)
All proteins in OPM
(2185 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
3. Peptides
(4 classes)
Class:
3.2. Beta-hairpin peptides
(9 superfamilies)
Superfamily:
3.2.01. Antimicrobial beta-hairpin (8 families)
Family:
3.2.01.08.
Lactoferricin B
PF00405
,
PDBsum
Lactoferricin B, peptide 36-60
Bos taurus
(
1lfc
)
Lactoferricin B, peptide 38-49
Bos taurus
(
1y58
, 1lfc, 1y5c)
3.2.01.01.
Arenicin
1.C.81 (TCDB)
PF04089
,
PDBsum
Arenicin-2
Arenicola marina
(
2jni
, 2jsb, 2l8x)
Arenicin-2, dimer
Arenicola marina
(
2l8x
, 2jni)
3.2.01.06.
Theta-defensin
Retrocyclin-2
Macaca mulatta
(
2atg
)
Theta-defensin 1 (RTD-1)
Macaca mulatta
(
1hvz
)
3.2.01.02.
Thanatin
Thanatin
Podisus maculiventris
(
8tfv
)
3.2.01.07.
Protegrin
Protegrin-1
Sus scrofa
(
1pg1
, 1zy6)
3.2.01.03.
Androctonin
Androctonin
Androctonus australis (Sahara scorpion)
(
1cz6
)
3.2.01.05.
Tachyplesin
Polyphemusin-1
Limulus polyphemus (Atlantic horseshoe crab)
(
1rkk
, 1x7k, 2b5k)
Tachyplesin-1
Tachypleus tridentatus (Japanese horseshoe crab)
(
1wo1
, 1ma2, 1ma4, 1ma5, 1ma6, 1wo0, 2lm8)
3.2.01.04.
Gomesin
Gomesin
Acanthoscurria gomesiana (Tarantula spider)
(
1kfp
)
See list of these PDB codes
3.2.01. Antimicrobial beta-hairpin (8 families) (12 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
3.2.01.01.
Arenicin-2, dimer
2l8x
Arenicola marina
Secreted
2
0
2.7 ± 1.1
87 ± 4
-4.0
3.2.01.01.
Arenicin-2
2jni
Arenicola marina
Secreted
1
0
2.1 ± 1.1
82 ± 15
-5.2
3.2.01.04.
Gomesin
1kfp
Acanthoscurria gomesiana (Tarantula spider)
Secreted
1
0
0.5 ± 1.0
75 ± 6
-2.7
3.2.01.08.
Lactoferricin B, peptide 36-60
1lfc
Bos taurus
Secreted
1
0
4.6 ± 0.5
90 ± 6
-5.3
3.2.01.05.
Polyphemusin-1
1rkk
Limulus polyphemus (Atlantic horseshoe crab)
Secreted
1
0
3.5 ± 3.7
63 ± 11
-4.0
3.2.01.08.
Lactoferricin B, peptide 38-49
1y58
Bos taurus
Secreted
1
0
2.9 ± 1.4
86 ± 18
-3.7
3.2.01.05.
Tachyplesin-1
1wo1
Tachypleus tridentatus (Japanese horseshoe crab)
Secreted
1
0
1.6 ± 1.3
90 ± 6
-4.5
3.2.01.06.
Theta-defensin 1 (RTD-1)
1hvz
Macaca mulatta
Secreted
1
0
0.8 ± 1.0
89 ± 4
-2.9
3.2.01.06.
Retrocyclin-2
2atg
Macaca mulatta
Secreted
1
0
2.4 ± 0.6
87 ± 9
-5.6
3.2.01.02.
Thanatin
8tfv
Podisus maculiventris
Secreted
1
0
3.7 ± 1.0
81 ± 4
-5.3
3.2.01.07.
Protegrin-1
1pg1
Sus scrofa
Secreted
1
0
2.2 ± 0.4
72 ± 4
-4.2
3.2.01.03.
Androctonin
1cz6
Androctonus australis (Sahara scorpion)
Secreted
1
0
1.5 ± 2.8
89 ± 16
-3.2
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA