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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
3. Peptides
(4 classes)
Class:
3.1. Alpha-helical peptides
(32 superfamilies)
Superfamily:
3.1.29. Cathelicidin (3 families)
1.C.33 (TCDB)
PF00666
,
PDBsum
Family:
3.1.29.01.
Cathelicidin
1.C.33 (TCDB)
PF00666
,
PDBsum
Antimicrobial protein CAP18, segment 135-166
Oryctolagus cuniculus
(
1lyp
)
Cathelicidin LL-37
Homo sapiens
(
2k6o
, 2fbs, 2fbu, 2fcg, 2lmf)
Cathelicidin-1
Gallus gallus
(
2amn
)
Cathelicidin-3, peptide 121-151
Gallus gallus
(
2hfr
)
Cathelicidin-6
Bos taurus
(
2ket
)
Cathelin-related peptide SC5 (SMAP-29)
Ovis aries
(
1fry
)
LL-37-derived peptide
Designed proteins
(
2l5m
)
Ovispirin-1
Ovis aries
(
1hu5
, 1hu6, 1hu7)
Prophenin-1
Sus scrofa
(
2i1d
, 2i1f, 2i1g, 2i1h)
Prophenin-1 analogue
Designed proteins
(
2i1e
, 2i1g)
3.1.29.02.
Indolicidin
Indolicidin (cathelicidin-4), a cyclic analog
Bos taurus
(
1qx9
, 1g89, 1g8c, 1hr1, 1qxq)
Indolicidin, with P->A substitution
Designed proteins
(
1hr1
, 1g89, 1g8c, 1qx9, 1qxq)
3.1.29.03.
Tritrpticin
Tritrpticin
Sus scrofa
(
1d6x
)
See list of these PDB codes
3.1.29. Cathelicidin (3 families)
1.C.33 (TCDB)
PF00666
,
PDBsum
(13 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
3.1.29.01.
Cathelin-related peptide SC5 (SMAP-29)
1fry
Ovis aries
Secreted
1
0
1.1 ± 0.8
18 ± 9
-3.5
3.1.29.01.
Cathelicidin-3, peptide 121-151
2hfr
Gallus gallus
Secreted
1
0
3.1 ± 4.2
86 ± 1
-8.0
3.1.29.01.
Prophenin-1
2i1d
Sus scrofa
Secreted
1
0
4.8 ± 1.9
70 ± 35
-5.9
3.1.29.01.
Cathelicidin-1
2amn
Gallus gallus
Secreted
1
0
5.0 ± 3.3
68 ± 4
-8.7
3.1.29.01.
Prophenin-1 analogue
2i1e
Designed proteins
Undefined
1
0
5.2 ± 1.0
53 ± 7
-7.5
3.1.29.02.
Indolicidin, with P->A substitution
1hr1
Designed proteins
Undefined
1
0
5.4 ± 4.0
84 ± 9
-8.3
3.1.29.01.
Ovispirin-1
1hu5
Ovis aries
Secreted
1
0
5.7 ± 0.5
81 ± 1
-9.2
3.1.29.01.
LL-37-derived peptide
2l5m
Designed proteins
Undefined
1
0
6.1 ± 1.0
89 ± 7
-9.7
3.1.29.02.
Indolicidin (cathelicidin-4), a cyclic analog
1qx9
Bos taurus
Secreted
1
0
6.6 ± 1.9
46 ± 15
-7.7
3.1.29.01.
Cathelicidin-6
2ket
Bos taurus
Secreted
1
0
7.1 ± 0.7
82 ± 3
-13.6
3.1.29.01.
Antimicrobial protein CAP18, segment 135-166
1lyp
Oryctolagus cuniculus
Secreted
1
0
7.4 ± 1.0
87 ± 9
-15.6
3.1.29.01.
Cathelicidin LL-37
2k6o
Homo sapiens
Secreted
1
0
8.1 ± 0.4
86 ± 8
-15.7
3.1.29.03.
Tritrpticin
1d6x
Sus scrofa
Secreted
1
0
9.4 ± 2.6
81 ± 38
-8.1
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA