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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(393 superfamilies)
Families
(668 families)
Species
(539 species)
Localization
(24 types)
All proteins in OPM
(2185 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.1. All alpha monotopic/peripheral
(60 superfamilies)
Superfamily:
2.1.02. Lipoxygenase (1 family)
PF00305
,
PDBsum
Family:
2.1.02.01.
Lipoxygenases
PF00305
,
PDBsum
12S-Lipoxygenase
Homo sapiens
(
3d3l
)
8R-Lipoxygenase, central and C-terminal domains
Plexaura homomalla
(
3fg3
, 2fng, 3fg1, 3fg4)
8R-Lipoxygenase, complete structure
Plexaura homomalla
(
3dy5
)
8R-Lipoxygenase, N-terminal domain
Plexaura homomalla
(
1u5u
)
Arachidonate 15-Lipoxygenase
Oryctolagus cuniculus
(
2p0m
, 1lox)
Arachidonate 5-lipoxygenase
Homo sapiens
(
3o8y
, 3v92, 3v98)
Arachidonate 5-lipoxygenase, complex with arachidonic acid
Homo sapiens
(
3v99
)
Seed lipoxygenase-1
Glycine max
(
1yge
, 1f8n, 1fgm, 1fgo, 1fgq, 1fgr, 1fgt, 1y4k, 2sbl, 3bnb, 3bnc, 3bnd, 3bne, 3pzw)
Seed lipoxygenase-3
Glycine max
(
1rrh
, 1hu9, 1ik3, 1jnq, 1lnh, 1n8q, 1no3, 1rov, 1rrl)
Seed lipoxygenase-B
Glycine max
(
2iuj
)
Seed lipoxygenase-D
Glycine max
(
2iuk
)
See list of these PDB codes
2.1.02. Lipoxygenase (1 family)
PF00305
,
PDBsum
(11 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
2.1.02.01.
Seed lipoxygenase-B
2iuj
Glycine max
Eukaryo. plasma
1
0
1.7 ± 3.0
51 ± 15
-4.8
2.1.02.01.
Arachidonate 5-lipoxygenase
3o8y
Homo sapiens
Eukaryo. plasma
1
0
2.1 ± 1.0
89 ± 4
-3.8
2.1.02.01.
8R-Lipoxygenase, complete structure
3dy5
Plexaura homomalla
Eukaryo. plasma
1
0
2.3 ± 1.5
88 ± 10
-3.2
2.1.02.01.
Arachidonate 5-lipoxygenase, complex with arachidonic acid
3v99
Homo sapiens
Eukaryo. plasma
1
0
3.0 ± 2.3
88 ± 9
-2.5
2.1.02.01.
Seed lipoxygenase-1
1yge
Glycine max
Eukaryo. plasma
1
0
3.0 ± 2.6
68 ± 3
-6.4
2.1.02.01.
8R-Lipoxygenase, N-terminal domain
1u5u
Plexaura homomalla
Eukaryo. plasma
1
0
3.1 ± 0.3
72 ± 3
-10.4
2.1.02.01.
Seed lipoxygenase-D
2iuk
Glycine max
Eukaryo. plasma
1
0
3.7 ± 1.7
85 ± 8
-6.2
2.1.02.01.
Seed lipoxygenase-3
1rrh
Glycine max
Eukaryo. plasma
1
0
3.8 ± 1.3
84 ± 7
-5.6
2.1.02.01.
8R-Lipoxygenase, central and C-terminal domains
3fg3
Plexaura homomalla
Eukaryo. plasma
1
0
5.0 ± 0.6
86 ± 5
-9.3
2.1.02.01.
12S-Lipoxygenase
3d3l
Homo sapiens
Eukaryo. plasma
1
0
5.0 ± 0.6
51 ± 3
-9.0
2.1.02.01.
Arachidonate 15-Lipoxygenase
2p0m
Oryctolagus cuniculus
Eukaryo. plasma
1
0
8.6 ± 0.1
87 ± 5
-14.3
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA