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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.1. Alpha-helical polytopic
(72 superfamilies)
Superfamily:
1.1.57. Peptidase AD (2 families)
1.A.54 (TCDB)
CL0130
,
PDBsum
Family:
1.1.57.01.
Type IV leader peptidase
PF01478
,
PDBsum
Peptidase A24B, FlaK domain protein
Methanococcus maripaludis
(
3s0x
)
1.1.57.02.
Presenilin
1.A.54 (TCDB)
PF01080
,
PDBsum
Intramembrane aspartate protease
Methanoculleus marisnigri
(
4hyg
, 4hyc, 4hyd)
See list of these PDB codes
1.1.57. Peptidase AD (2 families)
1.A.54 (TCDB)
CL0130
,
PDBsum
(2 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.1.57.02.
Intramembrane aspartate protease
4hyg
Methanoculleus marisnigri
Archaebac.
3
27
31.8 ± 0.3
0 ± 0
-172.7
1.1.57.01.
Peptidase A24B, FlaK domain protein
3s0x
Methanococcus maripaludis
Archaebac.
1
6
31.8 ± 1.6
40 ± 2
-67.7
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA