PDB ID or protein name
See list of these PDB codes

1.1.01. Rhodopsin-like receptors and pumps (4 families) 3.E.1 (TCDB) CL0192, PDBsum (66 proteins)

Family Protein Name PDB ID Species Localization Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
1.1.01.02. Rhodopsin, active (metarhodopsin II), without transducin peptide, dimer 3pxo Bos taurus Eukaryo. plasma 2 14 31.8 ± 1.2 0 ± 0 -125.4
1.1.01.01. Bacteriorhodopsin 1m0l Halobacterium salinarum Archaebac. 3 21 31.8 ± 1.1 0 ± 1 -121.1
1.1.01.01. Bacteriorhodopsin, from cubic phase 1ap9 Halobacterium salinarum Archaebac. 3 21 30.6 ± 1.2 0 ± 0 -97.8
1.1.01.04. Smoothened homolog 4jkv Homo sapiens Eukaryo. plasma 2 14 31.9 ± 1.2 0 ± 0 -98.5
1.1.01.01. Sensory rhodopsin II, tetramer 1h2s Natronomonas pharaonis Archaebac. 4 18 30.5 ± 1.1 0 ± 0 -123.4
1.1.01.01. Archaerhodopsin-2, trimeric 2ei4 Halobacterium sp. Archaebac. 3 21 30.5 ± 1.2 0 ± 1 -143.9
1.1.01.02. Squid rhodopsin, inactive, complex with inverse agonist 11-cis retinal, dimer 2z73 Todarodes pacificus Eukaryo. plasma 2 14 32.9 ± 1.0 0 ± 1 -143.3
1.1.01.02. C-X-C chemokine receptor type 4, inactive, dimer, complex with antagonist 3odu Homo sapiens Eukaryo. plasma 2 17 31.2 ± 1.1 0 ± 0 -129.5
1.1.01.01. Halorhodopsin 1e12 Halobacterium salinarum Archaebac. 3 21 31.8 ± 1.4 0 ± 1 -126.7
1.1.01.02. Rhodopsin, constitutively active mutant (metarhodopsin II), dimer 2x72 Bos taurus Eukaryo. plasma 2 14 30.0 ± 0.6 0 ± 0 -132.0
1.1.01.01. Bacteriorhodopsin, different loop conformaton 1fbk Halobacterium salinarum Archaebac. 3 21 30.0 ± 1.2 0 ± 0 -127.8
1.1.01.02. Beta-1 adrenergic receptor, inactive, dimer 4gpo Meleagris gallopavo Eukaryo. plasma 2 14 30.8 ± 1.2 0 ± 0 -144.8
1.1.01.01. Bacteriorhodopsin, trimer, complex with annular lipids 2zzl Halobacterium salinarum Archaebac. 3 21 29.8 ± 0.6 0 ± 0 -119.0
1.1.01.02. Beta-2 adrenergic receptor, inactive state, dimer 2rh1 Homo sapiens Eukaryo. plasma 2 14 31.8 ± 0.9 0 ± 1 -143.2
1.1.01.01. Archaeal-type opsin 2 3ug9 Chlamydomonas reinhardtii Eukaryo. plasma 2 14 31.0 ± 1.2 0 ± 0 -100.3
1.1.01.02. Opsin, active, retinal-free state, dimer 3cap Bos taurus Eukaryo. plasma 2 14 30.8 ± 1.1 0 ± 0 -130.1
1.1.01.01. Halorhodopsin 3a7k Natronomonas pharaonis Archaebac. 3 21 33.8 ± 1.4 1 ± 0 -141.3
1.1.01.02. Thrombin (proteinase-activated) receptor 1, PAR1 3vw7 Homo sapiens Eukaryo. plasma 1 7 33.4 ± 1.9 1 ± 0 -72.2
1.1.01.02. Histamine H1 receptor 3rze Homo sapiens Eukaryo. plasma 1 7 32.0 ± 1.4 1 ± 1 -72.4
1.1.01.02. Opioid kappa receptor 4djh Homo sapiens Eukaryo. plasma 2 14 32.0 ± 0.8 1 ± 0 -146.6
1.1.01.02. Beta-1 adrenergic receptor, inactive, complex with antagonist 2ycw Meleagris gallopavo Eukaryo. plasma 1 7 32.2 ± 1.3 2 ± 0 -77.8
1.1.01.02. Beta-1 adrenergic receptor, inactive, complex with agonist 2y02 Meleagris gallopavo Eukaryo. plasma 1 7 31.4 ± 1.3 2 ± 0 -76.9
1.1.01.02. Beta-1 adrenergic receptor, inactive, multiple mutations 2vt4 Meleagris gallopavo Eukaryo. plasma 1 7 32.8 ± 1.6 3 ± 1 -74.6
1.1.01.02. Muscarinic acetylcholine receptor M2 3uon Homo sapiens Eukaryo. plasma 1 7 31.8 ± 2.1 4 ± 2 -68.5
1.1.01.02. Neurotensin receptor type 1 4grv Rattus norvegicus Eukaryo. plasma 1 7 31.6 ± 1.1 4 ± 1 -75.1
1.1.01.02. Rhodopsin, inactive state, a dimer 2i36 Bos taurus Eukaryo. plasma 2 14 30.0 ± 1.4 4 ± 4 -125.6
1.1.01.02. C-X-C chemokine receptor type 4, inactive, with cyclic peptide antagonist 3oe0 Homo sapiens Eukaryo. plasma 2 14 32.2 ± 2.0 5 ± 6 -133.2
1.1.01.02. Muscarinic acetylcholine receptor M3 4daj Rattus norvegicus Eukaryo. plasma 1 7 32.2 ± 1.2 5 ± 0 -75.8
1.1.01.02. Opioid mu receptor 4dkl Mus musculus Eukaryo. plasma 2 14 32.0 ± 1.0 5 ± 0 -134.7
1.1.01.02. Rhodopsin, partially active, photobleached 2i37 Bos taurus Eukaryo. plasma 1 7 31.9 ± 1.5 5 ± 1 -79.1
1.1.01.02. 5-hydroxytryptamine receptor 1B, conformation 2 4iaq Homo sapiens Eukaryo. plasma 1 7 34.4 ± 1.7 6 ± 1 -77.4
1.1.01.02. Adenosine receptor A2a, complex with antibody 3vga Homo sapiens Eukaryo. plasma 1 7 30.4 ± 1.4 7 ± 2 -62.8
1.1.01.02. Beta-2 adrenergic receptor, inactive state 4gbr Homo sapiens Eukaryo. plasma 1 7 31.6 ± 1.3 7 ± 1 -71.7
1.1.01.02. Nociceptin receptor 4ea3 Homo sapiens Eukaryo. plasma 1 7 32.0 ± 1.2 7 ± 1 -65.6
1.1.01.02. 5-hydroxytryptamine receptor 1B, conformation 1 4iar Homo sapiens Eukaryo. plasma 1 7 33.6 ± 1.8 7 ± 1 -76.4
1.1.01.02. C-X-C chemokine receptor type 4, inactive, complex with antagonist 3oe6 Homo sapiens Eukaryo. plasma 1 7 35.3 ± 2.5 8 ± 7 -79.7
1.1.01.02. Dopamine D3 receptor 3pbl Homo sapiens Eukaryo. plasma 1 7 33.0 ± 1.8 8 ± 1 -56.6
1.1.01.02. Beta-2 adrenergic receptor, active state, complex with G-protein 3sn6 Homo sapiens Eukaryo. plasma 1 7 31.0 ± 1.6 8 ± 1 -68.2
1.1.01.02. Adenosine receptor A2a, inactive state, complex with antagonist 3eml Homo sapiens Eukaryo. plasma 1 7 31.8 ± 1.2 8 ± 12 -66.1
1.1.01.02. Adenosine receptor A2a, complex with antagonist 3uza Homo sapiens Eukaryo. plasma 1 7 31.6 ± 0.6 8 ± 1 -72.5
1.1.01.02. Adenosine receptor A2a, partially active state, complex with agonist 3qak Homo sapiens Eukaryo. plasma 1 7 29.8 ± 1.2 9 ± 0 -70.0
1.1.01.01. Archaerhodopsin-1 1uaz Halobacterium sp. Archaebac. 1 7 31.8 ± 1.3 9 ± 2 -65.3
1.1.01.02. Adenosine receptor A2a, inactive state, engineered, complex with inverse agonist 3pwh Homo sapiens Eukaryo. plasma 1 7 31.0 ± 1.3 9 ± 0 -67.3
1.1.01.02. Beta-2 adrenergic receptor, active state, complex with antibody 3p0g Homo sapiens Eukaryo. plasma 1 7 30.1 ± 1.4 9 ± 1 -62.9
1.1.01.02. Rhodopsin, active (metarhodopsin II), complex with peptide of transducin 3pqr Bos taurus Eukaryo. plasma 1 7 31.8 ± 1.1 9 ± 1 -78.3
1.1.01.02. Adenosine receptor A2a, partially active state, engineered, complex with agonist 2ydv Homo sapiens Eukaryo. plasma 1 7 31.0 ± 1.3 10 ± 0 -61.4
1.1.01.02. Sphingosine 1-phosphate receptor 1 3v2y Homo sapiens Eukaryo. plasma 1 7 32.2 ± 1.4 10 ± 0 -65.9
1.1.01.01. Proton-pumping rhodopsin-2 from algae 3am6 Acetabularia acetabulum Eukaryo. plasma 1 7 31.2 ± 1.6 10 ± 1 -65.4
1.1.01.02. Rhodopsin, inactive, complex with inverse agonist, 11-cis retinal 1gzm Bos taurus Eukaryo. plasma 1 7 32.2 ± 1.5 11 ± 1 -75.6
1.1.01.02. Rhodopsin, inactive, conformation 2 3oax Bos taurus Eukaryo. plasma 1 7 30.9 ± 1.4 11 ± 0 -73.6
1.1.01.01. Xanthorhodopsin 3ddl Salinibacter ruber Bact. Gram-neg inner 1 7 28.2 ± 1.8 11 ± 0 -60.7
1.1.01.02. Squid rhodopsin, inactive, complex with inverse agonist 11-cis retinal 2ziy Todarodes pacificus Eukaryo. plasma 1 7 32.9 ± 1.7 11 ± 2 -75.1
1.1.01.02. Opioid delta receptor 4ej4 Mus musculus Eukaryo. plasma 1 7 34.4 ± 0.8 11 ± 6 -73.2
1.1.01.02. Rhodopsin, inactive, conformation 3 1u19 Bos taurus Eukaryo. plasma 1 7 31.2 ± 1.5 12 ± 1 -71.9
1.1.01.01. Sensory Rhodopsin 1xio Anabaena sp. Bact. Gram-neg inner 1 7 31.9 ± 1.5 13 ± 4 -63.1
1.1.01.01. Sensory rhodopsin II, monomer 1h68 Natronomonas pharaonis Archaebac. 1 7 30.3 ± 1.5 15 ± 2 -60.0
1.1.01.02. 5-hydroxytryptamine receptor 2B 4ib4 Homo sapiens Eukaryo. plasma 1 7 34.0 ± 2.3 16 ± 2 -69.2
1.1.01.02. Adenosine receptor A2a, inactive state, with annular lipids 4eiy Homo sapiens Eukaryo. plasma 1 7 32.2 ± 1.2 18 ± 0 -70.4
1.1.01.01. Green-light absorbing proteorhodopsin 2l6x Gamma-proteobacterium Bact. Gram-neg inner 1 7 27.8 ± 1.3 18 ± 1 -55.2
1.1.01.01. Archaerhodopsin-2 1vgo Halobacterium sp. Archaebac. 1 7 30.7 ± 1.3 18 ± 2 -73.1
1.1.01.02. C-X-C chemokine receptor type 1 2lnl Homo sapiens Eukaryo. plasma 1 7 30.2 ± 0.9 19 ± 6 -54.4
1.1.01.02. Melanocortin-4 receptor model (inactive state) with antagonist AGRP 2iqv Homo sapiens Eukaryo. plasma 1 7 31.9 ± 1.1 19 ± 0 -49.1
1.1.01.02. TM1-TM2 fragment of fungal STE2 receptor 2k9p Saccharomyces cerevisiae Eukaryo. plasma 1 2 29.8 ± 3.1 21 ± 4 -10.5
1.1.01.02. Melanocortin-4 receptor model (active state) with agonist NDP-MSH 2iqr Homo sapiens Eukaryo. plasma 1 7 33.5 ± 2.0 24 ± 0 -60.6
1.1.01.01. Bacteriorhodopsin, monomer 1py6 Halobacterium salinarum Archaebac. 1 7 29.6 ± 2.2 24 ± 8 -59.7
1.1.01.03. Ectodomain of G-protein coupled receptor Mth 1fjr Drosophila melanogaster Eukaryo. plasma 1 0 1.8 ± 1.5 56 ± 13 -4.3