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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.3. Alpha/Beta monotopic/peripheral
(33 superfamilies)
Superfamily:
2.3.06. Alpha/beta-hydrolases
(15 families)
Family:
2.3.06.06. Fungal lipases
PF01764
,
PDBsum
Lipase
Photbacterium lipolyticum
(
2ory
)
Lipase 1, closed (inactive) state
Candida rugosa
(
1trh
)
Lipase 1, open (active) state
Candida rugosa
(
1lpp
, 1crl, 1lpm, 1lpn, 1lpo, 1lps, 3rar)
Lipase 2
Candida rugosa
(
1gz7
)
Geotrichum candidum
(
1thg
)
Yarrowia lipolytica
(
3o0d
, 4jei)
Lipase B, circular permutation
Candida antarctica
(
3icv
, 3icw)
Lipase B, open state
Candida antarctica
(
1lbs
, 1lbt, 1tca, 1tcb, 1tcc)
Lipase LipA
Serratia marcescens
(
2qua
, 2qub)
Triacylglycerol lipase
Rhizopus niveus
(
1lgy
, 1tic)
Penicillium expansum
(
3g7n
)
Triacylglycerol lipase, closed (inactive) state
Rhizomucor miehei
(
3tgl
, 1tgl, 4tgl, 5tgl)
Humicola lanuginosa
(
1dt5
, 1dt3, 1du4, 1tib, 4dhw, 4dyh, 4ea6, 4flf, 4gbg, 4gi1, 4glb, 4gwl)
Triacylglycerol lipase, open (active) state
Rhizomucor miehei
(
4tgl
)
Humicola lanuginosa
(
1ein
, 1dte, 1gt6)
Type-B carboxylesterase/lipase
Candida cylindracea
(
1cle
, 1llf)
See list of these PDB codes
2.3.06.06. Fungal lipases
PF01764
,
PDBsum
(16 proteins)
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
Lipase 2
1gz7
Candida rugosa
Secreted
1
0
4.8 ± 1.3
87 ± 10
-8.5
Lipase 1, closed (inactive) state
1trh
Candida rugosa
Secreted
1
0
4.9 ± 1.3
85 ± 7
-7.4
Lipase B, circular permutation
3icv
Candida antarctica
Secreted
2
0
8.3 ± 0.8
83 ± 7
-11.3
Lipase 1, open (active) state
1lpp
Candida rugosa
Secreted
1
0
10.0 ± 0.4
83 ± 1
-28.0
Type-B carboxylesterase/lipase
1cle
Candida cylindracea
Secreted
1
0
10.2 ± 0.0
83 ± 0
-24.7
Triacylglycerol lipase
3g7n
Penicillium expansum
Secreted
1
0
3.8 ± 1.1
81 ± 14
-9.0
Triacylglycerol lipase, closed (inactive) state
1dt5
Humicola lanuginosa
Secreted
1
0
5.1 ± 0.9
79 ± 13
-5.9
Lipase 2
3o0d
Yarrowia lipolytica
Secreted
1
0
6.8 ± 2.4
79 ± 26
-9.4
Lipase B, open state
1lbs
Candida antarctica
Secreted
1
0
3.7 ± 1.0
76 ± 6
-12.7
Triacylglycerol lipase, open (active) state
4tgl
Rhizomucor miehei
Secreted
1
0
8.8 ± 0.9
64 ± 11
-18.2
Triacylglycerol lipase, open (active) state
1ein
Humicola lanuginosa
Secreted
1
0
8.1 ± 0.8
63 ± 4
-14.5
Lipase
2ory
Photbacterium lipolyticum
Secreted
1
0
6.3 ± 1.1
62 ± 10
-12.0
Lipase LipA
2qua
Serratia marcescens
Secreted
1
0
8.9 ± 0.2
59 ± 0
-37.5
Triacylglycerol lipase, closed (inactive) state
3tgl
Rhizomucor miehei
Secreted
1
0
2.7 ± 1.1
39 ± 7
-5.8
Triacylglycerol lipase
1lgy
Rhizopus niveus
Secreted
1
0
1.9 ± 1.8
33 ± 16
-4.8
Lipase 2
1thg
Geotrichum candidum
Secreted
1
0
6.4 ± 1.7
23 ± 14
-4.7
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA