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PDB ID or protein name
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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.2. Alpha-helical bitopic
(42 superfamilies)
Superfamily:
1.2.43. Viral glycoprotein (6 families)
1.G (TCDB)
Family:
1.2.43.01.
Viral glycoprotein
PF00869
,
PDBsum
Capsid envelop protein complex
Dengue virus
(
3j2p
)
E1/E2 envelope glycoprotein complex
Barmah forest virus
(
2yew
)
Chikungunya virus
(
3j2w
)
Envelope glycoprotein
Tick-borne encephalitis virus
(
1urz
, 1n6g, 1na4, 1svb)
Envelope protein
Dengue virus
(
3g7t
)
Major envelope glycoprotein E, ectodomain
Dengue virus
(
1ok8
, 1oan, 1oke, 1p58, 1tg8, 1tge, 1thd)
1.2.43.02.
Alphavirus E1 glycoprotein
PF01589
,
PDBsum
Fusion glycoprotein E1
Semiliki forest virus
(
1rer
, 1dyl, 1i9w, 1vcq, 2ala, 2v33)
1.2.43.03.
Herpesvirus glycoprotein B
PF00606
,
PDBsum
Envelope glycoprotein B
Human herpesvirus
(
3nw8
, 2gum, 3nwa, 3nwd, 3nwf)
1.2.43.04.
Rhabdovirus spike glycoprotein
PF00974
,
PDBsum
Glycoprotein G
Vesicular stomatitis virus
(
2cmz
, 2j6j)
1.2.43.05.
Baculovirus gp64 envelope glycoprotein
PF03273
,
PDBsum
Major envelope glycoprotein
Autographa californica nuclear polyhedrosis virus
(
3duz
)
1.2.43.06.
Spike receptor binding domain
PF09408
,
PDBsum
Spike glycoprotein
Human SARS coronavirus
(
2ghv
, 1q4z, 1t7g, 1u4k, 1wnc, 1wyy, 1xjp, 1zv7, 1zv8, 1zvb, 2ajf, 2beq, 2bez, 2dd8, 2fxp, 2ghw, 3bgf, 3d0g, 3d0h, 3d0i)
See list of these PDB codes
1.2.43. Viral glycoprotein (6 families)
1.G (TCDB)
(11 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.2.43.01.
Major envelope glycoprotein E, ectodomain
1ok8
Dengue virus
Viral
3
0
5.2 ± 0.9
0 ± 6
-9.5
1.2.43.01.
E1/E2 envelope glycoprotein complex
2yew
Barmah forest virus
Viral
8
8
30.0 ± 0.8
0 ± 0
-53.5
1.2.43.01.
Capsid envelop protein complex
3j2p
Dengue virus
Viral
4
8
22.8 ± 0.4
0 ± 0
-62.7
1.2.43.01.
Envelope glycoprotein
1urz
Tick-borne encephalitis virus
Viral
3
0
5.9 ± 0.9
1 ± 8
-10.3
1.2.43.01.
E1/E2 envelope glycoprotein complex
3j2w
Chikungunya virus
Viral
8
8
30.8 ± 0.9
2 ± 0
-134.1
1.2.43.01.
Envelope protein
3g7t
Dengue virus
Viral
3
0
5.9 ± 0.9
1 ± 3
-12.2
1.2.43.02.
Fusion glycoprotein E1
1rer
Semiliki forest virus
Viral
3
0
2.6 ± 2.0
38 ± 5
-6.5
1.2.43.03.
Envelope glycoprotein B
3nw8
Human herpesvirus
Viral
3
0
4.6 ± 0.0
1 ± 1
-11.7
1.2.43.04.
Glycoprotein G
2cmz
Vesicular stomatitis virus
Viral
3
0
6.6 ± 0.0
3 ± 0
-10.5
1.2.43.05.
Major envelope glycoprotein
3duz
Autographa californica nuclear polyhedrosis virus
Viral
3
0
3.2 ± 0.4
4 ± 6
-9.3
1.2.43.06.
Spike glycoprotein
2ghv
Human SARS coronavirus
Viral
1
0
3.8 ± 1.9
45 ± 9
-6.8
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA