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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
2. Monotopic/peripheral
(4 classes)
Class:
2.3. Alpha/Beta monotopic/peripheral
(33 superfamilies)
Superfamily:
2.3.01. Transglycosidases (10 families)
CL0058
,
PDBsum
Family:
2.3.01.01.
Beta-glycanases
PF02055
,
PDBsum
Glucosylceramidase
Homo sapiens
(
1ogs
, 1y7v, 2f61, 2j25, 2nsx, 2nt0, 2nt1, 2v3d, 2v3e, 2v3f, 2wcg, 2wkl, 3gxd, 3gxf, 3gxi, 3gxm, 3ke0, 3keh)
Pan troglodytes
(
2vt0
)
2.3.01.02.
Family 1 of glycosyl hydrolase
PF00232
,
PDBsum
Beta-glucosidase 6
Oryza sativa (Rice)
(
3gnr
, 3gno, 3gnp)
Beta-glycosidase
Pyrococcus horikoshii
(
1vff
)
Dhurrinase
Sorghum bicolor
(
1v02
, 1v03)
2.3.01.03.
Alpha amylase
PF00128
,
PDBsum
Alpha-amylase A
Halothermothrix orenii
(
1wza
)
2.3.01.04.
Hyaluronidase
PF01630
,
PDBsum
Hyaluronidase
Apis mellifera
(
1fcq
, 1fcu, 1fcv, 2j88)
2.3.01.05.
Glucanosyltransferase
PF03198
,
PDBsum
1,3-beta-glucanosyltransferase GAS2
Saccharomyces cerevisiae
(
2w61
)
1,3-beta-glucanosyltransferase GAS2, different conformation
Saccharomyces cerevisiae
(
2w62
, 2w63)
2.3.01.06.
Cellulase (glycosyl hydrolase family 5)
PF00150
,
PDBsum
Endoglycoceramidase II
Rhodococcus sp.
(
2osx
, 2osw, 2osy, 2oyk, 2oyl, 2oym)
2.3.01.07.
Glycosyl hydrolases family 18
PF00704
,
PDBsum
Chitinase A
Serratia marcescens
(
1nh6
, 1ctn, 1ehn, 1eib, 1ffq, 1ffr, 1k9t, 1rd6, 1x6l, 1x6n, 2wk2, 2wlz, 2wm0)
Chitinase B
Serratia marcescens
(
1h0i
, 1e6n, 1goi, 1h0g, 1o6i, 1ogb, 1ogg)
2.3.01.08.
Glycosyl hydrolase family 26
PF02156
,
PDBsum
Endoglucanase H
Clostridium thermocellum
(
2vi0
, 1v0a, 2bv9, 2bvd, 2cip, 2cit, 2v3g)
2.3.01.09.
Glycosyl hydrolase family 53
PF07745
,
PDBsum
Arabinogalactan endo-1,4-beta-galactosidase
Humicola insolens (Soft-rot fungus)
(
1hjq
)
2.3.01.10.
Glycosyl hydrolase family 59
PF02057
,
PDBsum
Galactocerebrosidase
Mus musculus
(
3zr5
, 3zr6)
See list of these PDB codes
2.3.01. Transglycosidases (10 families)
CL0058
,
PDBsum
(15 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
2.3.01.01.
Glucosylceramidase
1ogs
Homo sapiens
Lysosome
1
0
4.2 ± 1.1
89 ± 4
-9.0
2.3.01.01.
Glucosylceramidase
2vt0
Pan troglodytes
Lysosome
1
0
2.3 ± 1.0
86 ± 5
-7.3
2.3.01.02.
Beta-glycosidase
1vff
Pyrococcus horikoshii
Archaebac.
1
0
3.9 ± 1.6
39 ± 10
-9.7
2.3.01.02.
Dhurrinase
1v02
Sorghum bicolor
Secreted
2
0
2.4 ± 0.5
89 ± 9
-5.1
2.3.01.02.
Beta-glucosidase 6
3gnr
Oryza sativa (Rice)
Secreted
1
0
4.8 ± 0.2
80 ± 1
-12.4
2.3.01.03.
Alpha-amylase A
1wza
Halothermothrix orenii
Secreted
1
0
1.6 ± 0.4
80 ± 1
-6.7
2.3.01.04.
Hyaluronidase
1fcq
Apis mellifera
Secreted
1
0
1.9 ± 2.7
36 ± 13
-3.7
2.3.01.05.
1,3-beta-glucanosyltransferase GAS2
2w61
Saccharomyces cerevisiae
Eukaryo. plasma
1
0
2.4 ± 2.3
60 ± 7
-5.4
2.3.01.05.
1,3-beta-glucanosyltransferase GAS2, different conformation
2w62
Saccharomyces cerevisiae
Eukaryo. plasma
1
0
2.7 ± 0.5
90 ± 1
-6.1
2.3.01.06.
Endoglycoceramidase II
2osx
Rhodococcus sp.
Secreted
1
0
7.9 ± 0.4
68 ± 1
-13.4
2.3.01.07.
Chitinase B
1h0i
Serratia marcescens
Secreted
1
0
3.8 ± 1.4
70 ± 12
-5.2
2.3.01.07.
Chitinase A
1nh6
Serratia marcescens
Secreted
1
0
2.7 ± 1.3
80 ± 5
-6.1
2.3.01.08.
Endoglucanase H
2vi0
Clostridium thermocellum
Bact. Gram-pos plas.
1
0
1.5 ± 1.3
36 ± 9
-3.8
2.3.01.09.
Arabinogalactan endo-1,4-beta-galactosidase
1hjq
Humicola insolens (Soft-rot fungus)
Secreted
1
0
1.8 ± 1.4
86 ± 7
-3.7
2.3.01.10.
Galactocerebrosidase
3zr5
Mus musculus
Lysosome
1
0
5.2 ± 0.6
87 ± 1
-15.3
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA