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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(392 superfamilies)
Families
(667 families)
Species
(538 species)
Localization
(24 types)
All proteins in OPM
(2172 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
3. Peptides
(4 classes)
Class:
3.1. Alpha-helical peptides
(32 superfamilies)
Superfamily:
3.1.11. Peptide hormones (4 families)
Family:
3.1.11.01.
Neuropeptide Y family
PF00159
,
PDBsum
Neuropeptide F
Moniezia expansa (Sheep tapeworm)
(
1k8v
)
Neuropeptide Y
Homo sapiens
(
1ron
)
Neuropeptide Y analogue
Sus scrofa
(
1tz4
, 1fvn, 1icy)
Pancreatic hormone
Bos taurus
(
1v1d
, 1bba, 1fjv)
Meleagris gallopavo
(
1ppt
, 2bf9, 2h3s, 2h4b)
Peptide YY
Homo sapiens
(
2dez
, 1qfa, 2df0, 2l60)
Sus scrofa
(
1ru5
, 1qbf, 1ruu, 2oon, 2oop, 2rlk)
3.1.11.02.
Glucagon family
PF00123
,
PDBsum
Extendin-4
Heloderma suspectum
(
1jrj
, 3c59, 3c5t)
Extendin-4, with extracellular domain of glucagon-like peptide-1 GPCR
Heloderma suspectum
(
3c59
, 1jrj, 3c5t)
Gastric inhibitory polypeptide, complex with N-terminal domain of GPCR
Homo sapiens
(
2qkh
, 1t5q, 2b4n, 2l70, 2l71, 2obu)
Glucagon
Sus scrofa
(
1gcn
)
Glucagon analog
Homo sapiens
(
1bh0
, 1nau, 2g49)
Glucagon analog, lipidated
Homo sapiens
(
2m5p
, 2m5q)
Glucagon-like peptide 1, in complex with extracellular domain of its GPCR
Homo sapiens
(
3iol
, 1d0r)
Glucagon-like peptide 2
Homo sapiens
(
2l64
, 2l63)
Pituitary adenylate cyclase activating polypeptide (PACAP)-38
Homo sapiens
(
2d2p
, 1gea, 2jod)
Vasoactive intestinal peptide
Homo sapiens
(
2rrh
, 2rri)
3.1.11.03.
Motilin family
PF04644
,
PDBsum
Motilin
Homo sapiens
(
1lbj
)
Obestatin
Mus musculus
(
2jsi
, 2jsh, 2jsj)
3.1.11.04.
Orexin
PF02072
,
PDBsum
Orexin-A
Homo sapiens
(
1wso
, 1cq0, 1r02)
See list of these PDB codes
3.1.11. Peptide hormones (4 families) (20 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
3.1.11.01.
Neuropeptide Y analogue
1tz4
Sus scrofa
Secreted
1
0
5.1 ± 1.0
88 ± 8
-6.1
3.1.11.01.
Neuropeptide Y
1ron
Homo sapiens
Secreted
1
0
7.9 ± 1.6
74 ± 10
-8.6
3.1.11.01.
Peptide YY
2dez
Homo sapiens
Secreted
1
0
4.0 ± 0.2
84 ± 2
-5.9
3.1.11.01.
Neuropeptide F
1k8v
Moniezia expansa (Sheep tapeworm)
Secreted
1
0
2.9 ± 1.1
68 ± 9
-7.0
3.1.11.01.
Peptide YY
1ru5
Sus scrofa
Secreted
1
0
5.1 ± 1.2
83 ± 3
-5.3
3.1.11.01.
Pancreatic hormone
1ppt
Meleagris gallopavo
Secreted
1
0
3.5 ± 2.9
90 ± 27
-3.9
3.1.11.01.
Pancreatic hormone
1v1d
Bos taurus
Secreted
1
0
1.2 ± 3.0
79 ± 32
-1.9
3.1.11.02.
Glucagon-like peptide 1, in complex with extracellular domain of its GPCR
3iol
Homo sapiens
Secreted
2
0
2.8 ± 04.0
70 ± 1
-6.7
3.1.11.02.
Glucagon
1gcn
Sus scrofa
Secreted
1
0
5.3 ± 1.0
78 ± 12
-6.6
3.1.11.02.
Glucagon-like peptide 2
2l64
Homo sapiens
Secreted
1
0
3.9 ± 0.3
90 ± 5
-10.8
3.1.11.02.
Glucagon analog
1bh0
Homo sapiens
Secreted
1
0
4.9 ± 4.2
78 ± 2
-6.1
3.1.11.02.
Glucagon analog, lipidated
2m5p
Homo sapiens
Secreted
1
0
5.2 ± 0.6
85 ± 4
-6.0
3.1.11.02.
Gastric inhibitory polypeptide, complex with N-terminal domain of GPCR
2qkh
Homo sapiens
Secreted
2
0
6.3 ± 3.2
64 ± 23
-5.9
3.1.11.02.
Vasoactive intestinal peptide
2rrh
Homo sapiens
Secreted
1
0
4.1 ± 0.3
79 ± 9
-5.7
3.1.11.02.
Pituitary adenylate cyclase activating polypeptide (PACAP)-38
2d2p
Homo sapiens
Secreted
1
0
3.9 ± 4.0
90 ± 0
-6.8
3.1.11.02.
Extendin-4
1jrj
Heloderma suspectum
Secreted
1
0
1.7 ± 0.8
79 ± 8
-5.0
3.1.11.02.
Extendin-4, with extracellular domain of glucagon-like peptide-1 GPCR
3c59
Heloderma suspectum
Secreted
2
0
1.9 ± 0.2
64 ± 0
-6.5
3.1.11.03.
Motilin
1lbj
Homo sapiens
Secreted
1
0
8.6 ± 1.6
51 ± 18
-4.9
3.1.11.03.
Obestatin
2jsi
Mus musculus
Secreted
1
0
2.0 ± 3.3
85 ± 13
-3.1
3.1.11.04.
Orexin-A
1wso
Homo sapiens
Secreted
1
0
6.4 ± 1.7
72 ± 14
-5.5
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA