PDB ID or protein name
See list of these PDB codes

1.1.028. Resistance-nodulation-cell division (5 families) 2.A.6 (TCDB) CL0322, PDBsum (27 proteins)

Family Protein Name PDB ID Species Localization Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
1.1.28.01. Multidrug efflux transporter AcrB, symmetric 3d9b Escherichia coli Bact. Gram-neg inner 3 36 28.4 ± 0.6 0 ± 0 -189.9
1.1.28.01. Multidrug efflux transporter AcrB, asymmetric, complex with ankyrin repeat 2 3nog Escherichia coli Bact. Gram-neg inner 3 36 29.0 ± 0.5 3 ± 0 -202.9
1.1.28.01. Heavy metal cation tricomponent efflux pump, ZneA 4k0e Ralstonia metallidurans Bact. Gram-neg inner 3 36 28.0 ± 0.7 0 ± 0 -161.5
1.1.28.01. AcrABZ-TolC multidrug efflux pump 5o66 Escherichia coli Bact. Gram-neg inner 6 39 28.6 ± 0.4 1 ± 0 -203.4
1.1.28.01. Multidrug efflux transporter AcrB-AcrZ complex, structure 1 4c48 Escherichia coli Bact. Gram-neg inner 6 39 29.2 ± 0.8 0 ± 0 -217.3
1.1.28.01. Multidrug efflux transporter AcrB, asymmetric 2gif Escherichia coli Bact. Gram-neg inner 3 36 29.0 ± 0.2 1 ± 0 -187.5
1.1.28.01. Drug efflux protein MtrD 4mt1 Neisseria gonorrhoeae Bact. Gram-neg inner 3 36 29.0 ± 0.3 0 ± 0 -214.1
1.1.28.01. Multidrug efflux transporter AcrB, asymmetric, complex with ankyrin repeat 1 4dx5 Escherichia coli Bact. Gram-neg inner 3 36 27.4 ± 0.7 1 ± 0 -181.0
1.1.28.01. Multidrug efflux transporter AcrB-AcrZ complex, structure 2 5nc5 Escherichia coli Bact. Gram-neg inner 6 39 29.8 ± 0.6 1 ± 0 -215.8
1.1.28.01. Multidrug efflux transporter AcrB with YajC subunit , symmetric 2rdd Escherichia coli Bact. Gram-neg inner 6 39 28.4 ± 0.5 0 ± 0 -156.2
1.1.28.01. AcrAB-TolC efflux pump, structure 1 5v78 Escherichia coli Bact. Gram-neg inner 3 39 27.0 ± 1.0 0 ± 0 -156.1
1.1.28.01. Multidrug exporter MexB 2v50 Pseudomonas aeruginosa Bact. Gram-neg inner 3 36 28.6 ± 1.0 0 ± 1 -167.3
1.1.28.01. AcrAB-TolC efflux pump, structure 2 5v5s Escherichia coli Bact. Gram-neg inner 3 36 28.6 ± 1.0 0 ± 0 -180.0
1.1.28.02. Efflux transporter CusA, complex with CusB, pre-extrusion state 3t56 Escherichia coli Bact. Gram-neg inner 3 36 30.4 ± 0.6 0 ± 0 -153.7
1.1.28.02. Efflux transporter CusA, apo-protein 3k07 Escherichia coli Bact. Gram-neg inner 3 33 27.4 ± 1.2 0 ± 0 -166.7
1.1.28.02. Efflux transporter CusA, Cu(i) complex 3kss Escherichia coli Bact. Gram-neg inner 3 33 28.8 ± 0.5 0 ± 0 -147.7
1.1.28.02. Efflux pump membrane transporter CmeB, structure 1 5lq3 Campylobacter jejuni Bact. Gram-neg inner 36 3 28.2 ± 0.6 0 ± 0 -186.7
1.1.28.02. Efflux pump membrane transporter CmeB, structure 2 5t0o Campylobacter jejuni Bact. Gram-neg inner 3 36 27.8 ± 0.6 0 ± 0 -183.8
1.1.28.02. Efflux transporter CusA, complex with CusB 3ne5 Escherichia coli Bact. Gram-neg inner 3 36 29.0 ± 0.7 0 ± 0 -165.0
1.1.28.03. SecDF secretion protein, structure 2 5xan Deinococcus radiodurans Bact. Gram-neg inner 1 12 29.0 ± 1.6 5 ± 0 -99.8
1.1.28.03. SecDF secretion protein, structure 3 5xap Deinococcus radiodurans Bact. Gram-neg inner 1 12 30.2 ± 0.8 2 ± 1 -97.2
1.1.28.03. SecDF secretion protein, structure 1 5xam Deinococcus radiodurans Bact. Gram-neg inner 1 12 30.2 ± 1.0 4 ± 1 -83.1
1.1.28.03. SecDF secretion protein 3aqp Thermus thermophilus Bact. Gram-neg inner 1 12 29.8 ± 0.9 5 ± 1 -93.8
1.1.28.04. Niemann-Pick C1 protein, NPC1, structure 1 5i31 Homo sapiens Lysosome 1 12 30.8 ± 0.0 5 ± 0 -50.4
1.1.28.04. Niemann-Pick C1 protein, NPC1, structure 2 5u73 Homo sapiens Lysosome 1 12 31.0 ± 2.0 3 ± 0 -76.7
1.1.28.05. Hopanoid transporter HpnN, structure 1 5khn Burkholderia multivorans Bact. Gram-neg inner 2 24 27.8 ± 1.0 0 ± 0 -111.2
1.1.28.05. Hopanoid transporter HpnN, structure 2 5khs Burkholderia multivorans Bact. Gram-neg inner 2 24 28.2 ± 0.8 0 ± 0 -100.7