UNIVERSITY OF MICHIGAN
|
COLLEGE OF PHARMACY
|
MOSBERG LAB
PDB ID or protein name
HOME
ABOUT OPM
DOWNLOAD OPM FILES
CONTACT US
PPM SERVER
LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(393 superfamilies)
Families
(668 families)
Species
(539 species)
Localization
(24 types)
All proteins in OPM
(2185 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
3. Peptides
(4 classes)
Class:
3.1. Alpha-helical peptides
(32 superfamilies)
Superfamily:
3.1.21. Insect antimicrobial peptides (7 families)
Family:
3.1.21.01.
Cecropin
1.C.17 (TCDB)
PF06451
,
PDBsum
Cecropin A (1-8) - magainin 2 (1-12) hybrid peptide
Hyalophora cecropia (Cecropia moth)
(
1d9j
, 1d9l, 1d9m, 1d9o, 1d9p)
Cecropin B analogue
Hyalophora cecropia (Cecropia moth)
(
2igr
)
Moricin
Bombyx mori
(
1kv4
)
Spodoptera litura
(
1x22
)
Manduca sexta
(
2jr8
)
Papiliocin
Papilio xuthus
(
2la2
)
3.1.21.05.
Poneratoxin
Poneratoxin
Paraponera clavata
(
1g92
)
3.1.21.02.
Mastoparan family
1.C.32 (TCDB)
PF08249
,
PDBsum
Mastoparan
Vespa xanthoptera
(
2czp
, 1a13)
Mastoparan-L
Vespula lewisii
(
1d7n
)
3.1.21.03.
Melittin
1.C.18 (TCDB)
PF01372
,
PDBsum
Melittin
Apis mellifera
(
2mlt
, 1bh1, 3qrx)
3.1.21.06.
Stomoxyn
PF11585
,
PDBsum
Spinigerin
Pseudacanthotermes spiniger
(
1zrv
, 1zrw)
Stomoxyn
Stomoxys calcitrans (Stable fly)
(
1zrx
)
3.1.21.07.
Cupiennin
Cupiennin-1a (M-ctenitoxin-Cs1a)
Cupiennius salei (Wandering spider)
(
2k38
)
3.1.21.04.
Oxyopinin
PF08025
,
PDBsum
Oxyopinin-4a
Oxyopes takobius (Lynx spider)
(
2l3i
)
See list of these PDB codes
3.1.21. Insect antimicrobial peptides (7 families) (14 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
3.1.21.01.
Moricin
1kv4
Bombyx mori
Secreted
1
0
6.1 ± 0.6
77 ± 14
-10.3
3.1.21.01.
Moricin
1x22
Spodoptera litura
Secreted
1
0
4.4 ± 1.1
70 ± 5
-9.2
3.1.21.01.
Papiliocin
2la2
Papilio xuthus
Secreted
1
0
7.8 ± 2.0
62 ± 4
-7.4
3.1.21.01.
Cecropin A (1-8) - magainin 2 (1-12) hybrid peptide
1d9j
Hyalophora cecropia (Cecropia moth)
Secreted
1
0
2.3 ± 0.9
90 ± 10
-6.4
3.1.21.01.
Cecropin B analogue
2igr
Hyalophora cecropia (Cecropia moth)
Secreted
1
0
5.1 ± 3.6
87 ± 0
-11.3
3.1.21.01.
Moricin
2jr8
Manduca sexta
Secreted
1
0
5.9 ± 1.6
75 ± 3
-11.5
3.1.21.02.
Mastoparan
2czp
Vespa xanthoptera
Secreted
1
0
5.2 ± 1.6
88 ± 16
-9.8
3.1.21.02.
Mastoparan-L
1d7n
Vespula lewisii
Secreted
1
0
6.5 ± 1.7
82 ± 16
-7.5
3.1.21.03.
Melittin
2mlt
Apis mellifera
Secreted
1
0
15.0 ± 1.0
65 ± 11
-12.0
3.1.21.04.
Oxyopinin-4a
2l3i
Oxyopes takobius (Lynx spider)
Secreted
1
0
6.2 ± 1.2
71 ± 10
-6.8
3.1.21.05.
Poneratoxin
1g92
Paraponera clavata
Secreted
1
0
22.8 ± 8.5
29 ± 7
-12.9
3.1.21.06.
Spinigerin
1zrv
Pseudacanthotermes spiniger
Secreted
1
0
2.1 ± 3.4
77 ± 5
-3.9
3.1.21.06.
Stomoxyn
1zrx
Stomoxys calcitrans (Stable fly)
Secreted
1
0
5.7 ± 0.0
80 ± 0
-12.3
3.1.21.07.
Cupiennin-1a (M-ctenitoxin-Cs1a)
2k38
Cupiennius salei (Wandering spider)
Secreted
1
0
8.1 ± 4.0
77 ± 9
-5.1
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA