PDB ID or protein name
See list of these PDB codes

3.2.005. Lasso peptides (3 families) (28 proteins)

Family Protein Name PDB ID Species Localization Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
3.2.05.01. Sviceucin 2ls1 Streptomyces sviceus Secreted 1 0 2.6 ± 1.3 78 ± 5 -7.0
3.2.05.01. Siamycin II (tricyclic peptide RP71935) 1rpb Streptomyces sp. Secreted 1 0 4.2 ± 1.3 85 ± 15 -8.3
3.2.05.02. Chaxapeptin 1 2n5c Streptomyces leeuwenhoekii Secreted 1 0 7.2 ± 1.0 82 ± 9 -8.8
3.2.05.02. Microcin J25, redesigned, version 1 2mmt Designed proteins Undefined 1 0 3.0 ± 0.9 90 ± 5 -5.2
3.2.05.02. Astexin-3 2m8f Asticcacaulis excentricus Secreted 1 0 6.2 ± 1.1 64 ± 28 -5.9
3.2.05.02. LP2006 5jpl Nocardiopsis alba Secreted 1 0 3.6 ± 1.7 59 ± 12 -4.2
3.2.05.02. Microcin J25, redesigned, version 2 2mmw Designed proteins Undefined 1 0 2.6 ± 3.5 90 ± 4 -3.7
3.2.05.02. Benenodin-1, state 2 6b5w Asticcacaulis benevestitus Secreted 1 0 3.3 ± 1.6 82 ± 7 -5.8
3.2.05.02. Sphingopyxin I 5jqf Sphingopyxis alaskensis Undefined 1 0 1.7 ± 1.8 40 ± 16 -3.7
3.2.05.02. Astexin-1, structure 1 2lti Asticcacaulis excentricus Secreted 1 0 2.4 ± 1.0 85 ± 9 -3.6
3.2.05.02. Subterisin 5xm4 Novosphingobium subterraneum Secreted 1 0 4.1 ± 1.6 80 ± 31 -4.5
3.2.05.02. Astexin-1, structure 2 2m37 Asticcacaulis excentricus Secreted 1 0 3.2 ± 1.1 83 ± 13 -5.1
3.2.05.02. Streptomonomicin 2mw3 Streptomonospora alba Secreted 1 0 8.8 ± 3.2 74 ± 1 -10.6
3.2.05.02. Caulosegnin II 5d9e Caulobacter segnis Secreted 1 0 8.9 ± 3.2 79 ± 8 -7.6
3.2.05.02. Caulosegnin I 2lx6 Caulobacter segnis Secreted 1 0 2.9 ± 0.8 15 ± 5 -6.0
3.2.05.02. Acinetodin 5ui6 Acinetobacter gyllenbergii Secreted 1 0 2.4 ± 1.6 70 ± 16 -2.7
3.2.05.02. Lassomycin 2mai Lentzea kentuckyensis Secreted 1 0 3.1 ± 1.0 72 ± 9 -4.7
3.2.05.02. Klebsidin 5ui7 Klebsiella pneumoniae Secreted 1 0 2.5 ± 1.4 62 ± 11 -3.7
3.2.05.02. Microcin J25, peptide 38-58, cleaved after 47 1s7p Escherichia coli Secreted 1 0 4.7 ± 1.2 83 ± 18 -5.7
3.2.05.02. Xanthomonin I 4nag Xanthomonas gardneri Secreted 1 0 8.7 ± 2.4 81 ± 11 -5.0
3.2.05.02. Sphaericin 5gvo Planomonospora sphaerica Secreted 1 0 7.9 ± 3.6 31 ± 13 -11.0
3.2.05.02. Microcin J25, peptide 38-58 1q71 Escherichia coli Secreted 1 0 3.3 ± 3.2 75 ± 17 -5.2
3.2.05.02. Xanthomonin II 2mfv Xanthomonas gardneri Secreted 1 0 4.1 ± 0.9 38 ± 6 -4.4
3.2.05.02. Rubrivinodin 5oqz Rubrivivax gelatinosus Secreted 1 0 4.0 ± 1.4 84 ± 11 -6.0
3.2.05.02. Caulonodin 2mlj Caulobacter sp. Secreted 1 0 2.4 ± 1.7 87 ± 15 -5.0
3.2.05.02. Benenodin-1, state 1 5tj1 Asticcacaulis benevestitus Secreted 1 0 6.0 ± 2.6 78 ± 5 -7.6
3.2.05.02. Astexin-4 2n6u Asticcacaulis excentricus Secreted 1 0 2.8 ± 1.1 41 ± 21 -3.8
3.2.05.03. Bicyclic peptide BI-32169 3njw Streptomyces sp. Secreted 1 0 6.1 ± 0.3 86 ± 3 -9.9