PDB ID or protein name
See list of these PDB codes

1.1.11. General secretory pathway (Sec) (1 family) 3.A.5 (TCDB) PF00344, PDBsum (18 proteins)

Family Protein Name PDB ID Species Localization Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
1.1.11.01. Protein translocase SecY, closed state, mutant 1rh5 Methanococcus jannaschii Archaebac. 3 12 29.0 ± 1.1 10 ± 0 -93.4
1.1.11.01. Protein translocase SecY, complex with ribosome 2 3bo0 Methanococcus jannaschii Archaebac. 3 12 29.6 ± 1.2 6 ± 2 -78.0
1.1.11.01. Protein translocase SecY, complex with SecA 3din Thermotoga maritima Bact. Gram-neg inner 3 13 26.9 ± 0.1 5 ± 0 -63.3
1.1.11.01. Protein translocase SecY, pre-open state 2zjs Thermus thermophilus Bact. Gram-neg inner 2 11 30.7 ± 1.2 7 ± 0 -100.7
1.1.11.01. Protein translocase SecY, mutant with full-plug (TM2a) deletion 2yxr Methanococcus jannaschii Archaebac. 3 12 29.7 ± 0.8 4 ± 4 -95.6
1.1.11.01. Protein translocase Sec61, complex with ribosome 2wwb Canis lupus familiaris Endoplasm. reticulum 3 12 26.3 ± 0.5 13 ± 0 -60.5
1.1.11.01. Protein translocase SecY, partialy open 3mp7 Pyrococcus furiosus Archaebac. 2 10 30.1 ± 1.0 5 ± 6 -94.0
1.1.11.01. Protein translocase SecY, complex with ribosome 1 3dkn Methanococcus jannaschii Archaebac. 3 12 27.8 ± 1.8 2 ± 0 -80.9
1.1.11.01. Ribosome-SecYE complex, structure 1 3j01 Escherichia coli Bact. Gram-neg inner 2 13 28.6 ± 0.0 5 ± 0 -86.4
1.1.11.01. Protein translocase SecY, closed state 2zqp Thermus thermophilus Bact. Gram-neg inner 2 11 29.8 ± 0.4 9 ± 0 -99.4
1.1.11.01. Protein translocase SecY, mutant with half-plug (TM2a) deletion 2yxq Methanococcus jannaschii Archaebac. 3 12 29.2 ± 1.1 6 ± 0 -89.1
1.1.11.01. Protein translocase SecY, closed state 1rhz Methanococcus jannaschii Archaebac. 3 12 29.4 ± 1.0 5 ± 0 -89.2
1.1.11.01. Protein translocase SecY, complex with ribosome 3 1vvk Methanococcus jannaschii Archaebac. 3 12 28.6 ± 0.7 10 ± 0 -90.3
1.1.11.01. Ribosome-SecYE complex, structure 2 3j45 Escherichia coli Bact. Gram-neg inner 3 13 26.8 ± 0.2 10 ± 0 -65.3
1.1.11.01. Ribosome-SecYE complex, structure 3 3j46 Escherichia coli Bact. Gram-neg inner 4 14 27.2 ± 1.0 14 ± 0 -56.8
1.1.11.01. Protein translocase Sec61, structure 1 4cg5 Canis lupus familiaris Endoplasm. reticulum 3 12 27.2 ± 0.9 5 ± 1 -72.9
1.1.11.01. Protein translocase Sec61, structure 2 4cg6 Canis lupus familiaris Endoplasm. reticulum 4 13 28.8 ± 1.2 7 ± 1 -79.9
1.1.11.01. Protein translocase Sec61, structure 3 4cg7 Canis lupus familiaris Endoplasm. reticulum 3 12 26.8 ± 0.3 10 ± 0 -69.9