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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(10 classes)
Superfamilies
(208 superfamilies)
Families
(301 families)
Species
(294 species)
Localization
(22 types)
All proteins in OPM
(869 entries)
Protein Links
PDB Sum
,
PDB
,
MSD
,
SCOP
,
Swiss-Prot
,
Pfam
,
OCA
,
MMDB
Type:
1. Transmembrane
(2 classes)
Class:
1.1. Alpha-helical transmembrane
(54 superfamilies)
Superfamily:
1.1.08. P-type ATPase (P-ATPase) (1 family)
3.A.3 (TCDB)
Family:
1.1.08.01.
P-ATPase
3.A.3 (TCDB)
Calcium ATPase, E1-2Ca state
Oryctolagus cuniculus
(
1su4
, 1t5t, 2c9m)
Calcium ATPase, E1-ATP state
Oryctolagus cuniculus
(
1t5s
, 1xp5)
Calcium ATPase, E1P-ADP state
Oryctolagus cuniculus
(
1wpe
, 1vfp, 2z9r, 2zbd, 3ba6)
Calcium ATPase, E2 state (Ca-free)
Oryctolagus cuniculus
(
2agv
, 1iwo, 1kju, 2by4, 2c88, 2c8k, 2c8l, 2dqs, 2ear, 2eas, 2eat, 2eau, 2oa0, 2zbe, 2zbf, 2zbg, 3fps)
Calcium ATPase, E2-Pi state
Oryctolagus cuniculus
(
1wpg
, 2o9j, 3b9r, 3fgo, 3fpb)
Calcium ATPase, E2-Pi state, alternative conformation
Oryctolagus cuniculus
(
3b9b
)
Plasma membrane proton pump, E1-ATP state
Arabidopsis thaliana
(
3b8c
)
Sodium-potassium pump, E2-Pi state
Sus scrofa
(
3b8e
)
Sodium-potassium pump, E2-Pi state
Squalus acanthias
(
2zxe
, 3a3y)
1.1.08. P-type ATPase (P-ATPase) (1 family)
3.A.3 (TCDB)
(9 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.1.08.01.
Sodium-potassium pump, E2-Pi state
3b8e
Sus scrofa
Eukaryo. plasma
3
12
30.0 ± 1.0
12 ± 2
-121.1
1.1.08.01.
Calcium ATPase, E2-Pi state, alternative conformation
3b9b
Oryctolagus cuniculus
Endoplasm. reticulum
1
10
28.0 ± 1.5
15 ± 2
-80.4
1.1.08.01.
Plasma membrane proton pump, E1-ATP state
3b8c
Arabidopsis thaliana
Eukaryo. plasma
1
10
27.5 ± 1.8
11 ± 3
-69.4
1.1.08.01.
Sodium-potassium pump, E2-Pi state
2zxe
Squalus acanthias
Eukaryo. plasma
3
13
30.1 ± 1.8
8 ± 2
-115.7
1.1.08.01.
Calcium ATPase, E1-2Ca state
1su4
Oryctolagus cuniculus
Endoplasm. reticulum
1
10
29.0 ± 2.8
23 ± 4
-81.0
1.1.08.01.
Calcium ATPase, E2-Pi state
1wpg
Oryctolagus cuniculus
Endoplasm. reticulum
1
10
30.0 ± 1.5
19 ± 2
-89.9
1.1.08.01.
Calcium ATPase, E1-ATP state
1t5s
Oryctolagus cuniculus
Endoplasm. reticulum
1
10
27.0 ± 1.2
24 ± 1
-80.4
1.1.08.01.
Calcium ATPase, E1P-ADP state
1wpe
Oryctolagus cuniculus
Endoplasm. reticulum
1
10
30.5 ± 1.0
19 ± 1
-79.1
1.1.08.01.
Calcium ATPase, E2 state (Ca-free)
2agv
Oryctolagus cuniculus
Endoplasm. reticulum
1
10
30.1 ± 1.8
18 ± 3
-81.8
Copyright © 2005-
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA