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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(11 classes)
Superfamilies
(393 superfamilies)
Families
(668 families)
Species
(539 species)
Localization
(24 types)
All proteins in OPM
(2185 proteins)
Protein Links
PDB Sum
,
PDB
,
OCA
,
MPKS
,
PDBTM
,
MPDB
,
CGDB
Type:
1. Transmembrane
(3 classes)
Class:
1.3. Beta-barrel transmembrane
(27 superfamilies)
Superfamily:
1.3.20. Ligand-gated protein channels (n=22,S=24) (1 family)
1.B.14 (TCDB)
PF00593
,
PDBsum
Family:
1.3.20.01.
Outer Membrane Receptor (OMR)
1.B.14 (TCDB)
PF00593
,
PDBsum
Colicin I receptor
Escherichia coli
(
2hdf
)
Colicin I receptor complex with binding domain of Colicin Ia
Escherichia coli
(
2hdi
)
Enantio-pyochelin receptor FetA
Pseudomonas fluorescens
(
3qlb
)
Fe(III)-pyochelin receptor FptA
Pseudomonas aeruginosa
(
1xkw
)
Fe-regulated protein B
Neisseria meningitidis
(
4aip
)
Fe-regulated protein B, different variant
Neisseria meningitidis
(
4aiq
, 4b70)
Ferric enterobactin receptor FepA
Escherichia coli
(
1fep
)
Ferric hydroxamate uptake receptor FhuA
Escherichia coli
(
1qfg
, 1by3, 1by5, 1fcp, 1fi1, 1qff, 1qjq, 1qkc, 2fcp)
Ferric hydroxamate uptake receptor FhuA, complex with TonB
Escherichia coli
(
2grx
)
Hemophore receptor HasR
Serratia marcescens
(
3csl
, 3csn, 3ddr)
Outer membrane cobalamin transporter BtuB
Escherichia coli
(
1nqe
, 1nqf, 1nqg, 1nqh, 3m8b, 3m8d, 3rgm, 3rgn)
Outer membrane cobalamin transporter BtuB, complex with colicin E2 R-domain
Escherichia coli
(
2ysu
)
Outer membrane cobalamin transporter BtuB, complex with colicin E3 R-domain
Escherichia coli
(
1ujw
)
Outer membrane cobalamin transporter BtuB, complex with TonB
Escherichia coli
(
2gsk
)
Outer membrane cobalamin transporter BtuB, meso form
Escherichia coli
(
2guf
)
Outer membrane cobalamin transporter BtuB, with cyanocobalamin
Escherichia coli
(
3m8d
)
Outer membrane heme transporter ShuA
Shigella dysenteriae
(
3fhh
)
Outer membrane receptor FauA
Bordetella pertussis
(
3efm
)
Outer membrane transporter FecA
Escherichia coli
(
1kmo
, 1pnz, 1po0)
Outer membrane transporter FecA, different conformation
Escherichia coli
(
1kmp
, 1po3)
Pesticin receptor FyuA
Yersinia pestis
(
4epa
)
Pyoverdine Outer Membrane Receptor FpvA
Pseudomonas aeruginosa
(
2iah
, 1xkh, 2o5p, 2w16, 2w6t, 2w6u, 2w75, 2w76, 2w77, 2w78)
Transferrin-binding protein A, complex with full-length transferrin
Neisseria meningitidis
(
3v8x
)
Transferrin-binding protein A, complex with human serotransferrin
Neisseria meningitidis
(
3v89
)
See list of these PDB codes
1.3.20. Ligand-gated protein channels (n=22,S=24) (1 family)
1.B.14 (TCDB)
PF00593
,
PDBsum
(24 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.3.20.01.
Ferric hydroxamate uptake receptor FhuA
1qfg
Escherichia coli
Bact. Gram-neg outer
1
22
24.7 ± 1.0
5 ± 1
-81.3
1.3.20.01.
Outer membrane cobalamin transporter BtuB, complex with TonB
2gsk
Escherichia coli
Bact. Gram-neg outer
1
22
23.4 ± 0.7
5 ± 0
-77.5
1.3.20.01.
Outer membrane cobalamin transporter BtuB, complex with colicin E3 R-domain
1ujw
Escherichia coli
Bact. Gram-neg outer
1
22
23.6 ± 1.1
5 ± 0
-71.5
1.3.20.01.
Ferric enterobactin receptor FepA
1fep
Escherichia coli
Bact. Gram-neg outer
1
22
24.3 ± 1.1
1 ± 0
-77.2
1.3.20.01.
Colicin I receptor complex with binding domain of Colicin Ia
2hdi
Escherichia coli
Bact. Gram-neg outer
1
22
23.4 ± 0.9
3 ± 3
-72.7
1.3.20.01.
Outer membrane cobalamin transporter BtuB, with cyanocobalamin
3m8d
Escherichia coli
Bact. Gram-neg outer
1
22
23.3 ± 0.8
6 ± 1
-70.5
1.3.20.01.
Outer membrane transporter FecA
1kmo
Escherichia coli
Bact. Gram-neg outer
1
22
24.5 ± 1.2
3 ± 0
-69.6
1.3.20.01.
Colicin I receptor
2hdf
Escherichia coli
Bact. Gram-neg outer
1
22
23.4 ± 0.9
4 ± 0
-70.9
1.3.20.01.
Enantio-pyochelin receptor FetA
3qlb
Pseudomonas fluorescens
Bact. Gram-neg outer
1
22
23.4 ± 0.8
7 ± 0
-75.3
1.3.20.01.
Outer membrane cobalamin transporter BtuB
1nqe
Escherichia coli
Bact. Gram-neg outer
1
22
23.4 ± 1.0
5 ± 0
-68.8
1.3.20.01.
Outer membrane cobalamin transporter BtuB, meso form
2guf
Escherichia coli
Bact. Gram-neg outer
1
22
23.4 ± 0.9
6 ± 7
-69.3
1.3.20.01.
Transferrin-binding protein A, complex with human serotransferrin
3v89
Neisseria meningitidis
Bact. Gram-neg outer
1
22
22.8 ± 0.8
3 ± 1
-68.9
1.3.20.01.
Pyoverdine Outer Membrane Receptor FpvA
2iah
Pseudomonas aeruginosa
Bact. Gram-neg outer
1
22
24.0 ± 0.5
8 ± 0
-79.7
1.3.20.01.
Hemophore receptor HasR
3csl
Serratia marcescens
Bact. Gram-neg outer
1
22
25.4 ± 1.3
4 ± 5
-72.2
1.3.20.01.
Transferrin-binding protein A, complex with full-length transferrin
3v8x
Neisseria meningitidis
Bact. Gram-neg outer
1
24
23.2 ± 0.6
3 ± 0
-66.6
1.3.20.01.
Fe(III)-pyochelin receptor FptA
1xkw
Pseudomonas aeruginosa
Bact. Gram-neg outer
1
22
24.8 ± 1.0
5 ± 4
-84.3
1.3.20.01.
Outer membrane receptor FauA
3efm
Bordetella pertussis
Bact. Gram-neg outer
1
22
24.7 ± 0.6
11 ± 0
-77.5
1.3.20.01.
Pesticin receptor FyuA
4epa
Yersinia pestis
Bact. Gram-neg outer
1
22
23.6 ± 0.8
3 ± 0
-73.5
1.3.20.01.
Outer membrane transporter FecA, different conformation
1kmp
Escherichia coli
Bact. Gram-neg outer
1
22
24.9 ± 0.9
4 ± 0
-74.0
1.3.20.01.
Outer membrane heme transporter ShuA
3fhh
Shigella dysenteriae
Bact. Gram-neg outer
1
22
24.6 ± 0.9
5 ± 0
-70.7
1.3.20.01.
Fe-regulated protein B
4aip
Neisseria meningitidis
Bact. Gram-neg outer
3
66
23.4 ± 0.3
0 ± 0
-144.6
1.3.20.01.
Ferric hydroxamate uptake receptor FhuA, complex with TonB
2grx
Escherichia coli
Bact. Gram-neg outer
1
22
24.6 ± 1.1
3 ± 0
-77.2
1.3.20.01.
Outer membrane cobalamin transporter BtuB, complex with colicin E2 R-domain
2ysu
Escherichia coli
Bact. Gram-neg outer
1
22
24.2 ± 1.0
5 ± 0
-75.2
1.3.20.01.
Fe-regulated protein B, different variant
4aiq
Neisseria meningitidis
Bact. Gram-neg outer
1
22
23.6 ± 0.9
6 ± 0
-69.7
Copyright © 2005-2013
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA