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LIPID COMPOSITION ATLAS
Protein Classification
Types
(3 types)
Classes
(10 classes)
Superfamilies
(208 superfamilies)
Families
(301 families)
Species
(294 species)
Localization
(22 types)
All proteins in OPM
(869 entries)
Protein Links
PDB Sum
,
PDB
,
MSD
,
SCOP
,
Swiss-Prot
,
Pfam
,
OCA
,
MMDB
Type:
1. Transmembrane
(2 classes)
Class:
1.1. Alpha-helical transmembrane
(54 superfamilies)
Superfamily:
1.1.27. Major Intrinsic Protein (MIP) (1 family)
1.A.8 (TCDB)
Family:
1.1.27.01.
Aquaporin-like
1.A.8 (TCDB)
Aquaglyceroporin
Plasmodium falciparum
(
3c02
)
Aquaporin Aqpm
Methanobacterium thermoautotrophicum
(
2f2b
, 2evu)
Aquaporin AQY1
Pichia pastoris
(
2w2e
, 2w1p)
Aquaporin Sopip2
Spinacia oleracea
(
1z98
)
Aquaporin Sopip2, open state
Spinacia oleracea
(
2b5f
)
Aquaporin Z
Escherichia coli
(
1rc2
, 2abm, 2o9d, 2o9e, 2o9f, 2o9g)
Aquaporin-0
Ovis aries
(
2b6o
, 1sor)
Bos taurus
(
1ymg
, 1tm8, 2b6p, 2c32)
Ovis aries
(
1sor
, 2b6o)
Aquaporin-0, open state
Bos taurus
(
2b6p
, 1ymg, 2c32)
Aquaporin-1
Bos taurus
(
1j4n
)
Homo sapiens
(
1h6i
, 1fqy, 1ih5)
Aquaporin-4
Rattus norvegicus
(
2d57
, 2zz9)
Homo sapiens
(
3gd8
)
Aquaporin-5
Homo sapiens
(
3d9s
)
Glycerol uptake facilitator
Escherichia coli
(
1ldf
, 1fx8, 1lda, 1ldi)
1.1.27. Major Intrinsic Protein (MIP) (1 family)
1.A.8 (TCDB)
(16 proteins)
Family
Protein Name
PDB ID
Species
Localization
Num. Subunits
Num. TM Sec. Structs.
Hydrophobic Thickness or Depth (Å)
Tilt Angle (°)
ΔG
transfer
(kcal/mol)
1.1.27.01.
Aquaporin Aqpm
2f2b
Methanobacterium thermoautotrophicum
Archaebac.
4
32
24.0 ± 1.2
0 ± 1
-132.8
1.1.27.01.
Aquaporin-1
1h6i
Homo sapiens
Eukaryo. plasma
4
32
25.0 ± 1.5
0 ± 1
-148.9
1.1.27.01.
Aquaporin Z
1rc2
Escherichia coli
Bact. gram-neg inner
4
32
27.5 ± 1.5
0 ± 2
-149.6
1.1.27.01.
Aquaporin Sopip2
1z98
Spinacia oleracea
Eukaryo. plasma
4
32
27.5 ± 1.2
0 ± 1
-140.7
1.1.27.01.
Glycerol uptake facilitator
1ldf
Escherichia coli
Bact. gram-neg inner
4
32
26.6 ± 0.8
0 ± 0
-167.6
1.1.27.01.
Aquaporin Sopip2, open state
2b5f
Spinacia oleracea
Eukaryo. plasma
4
32
27.4 ± 1.0
1 ± 1
-144.0
1.1.27.01.
Aquaporin-0, open state
2b6p
Bos taurus
Eukaryo. plasma
4
32
28.3 ± 0.9
0 ± 1
-146.5
1.1.27.01.
Aquaglyceroporin
3c02
Plasmodium falciparum
Eukaryo. plasma
4
32
31.0 ± 1.6
0 ± 1
-155.3
1.1.27.01.
Aquaporin-0
2b6o
Ovis aries
Eukaryo. plasma
4
32
30.5 ± 1.2
0 ± 1
-169.9
1.1.27.01.
Aquaporin-4
2d57
Rattus norvegicus
Eukaryo. plasma
4
32
29.8 ± 1.1
0 ± 1
-154.5
1.1.27.01.
Aquaporin-1
1j4n
Bos taurus
Eukaryo. plasma
4
32
29.2 ± 1.2
0 ± 1
-150.9
1.1.27.01.
Aquaporin-5
3d9s
Homo sapiens
Eukaryo. plasma
4
32
29.5 ± 1.2
0 ± 1
-160.3
1.1.27.01.
Aquaporin-0
1ymg
Bos taurus
Eukaryo. plasma
4
32
29.2 ± 0.9
0 ± 1
-155.3
1.1.27.01.
Aquaporin-4
3gd8
Homo sapiens
Eukaryo. plasma
4
32
27.9 ± 1.1
0 ± 1
-154.3
1.1.27.01.
Aquaporin AQY1
2w2e
Pichia pastoris
Eukaryo. plasma
4
32
30.0 ± 0.9
0 ± 1
-148.2
1.1.27.01.
Aquaporin-0
1sor
Ovis aries
Eukaryo. plasma
4
32
29.0 ± 1.0
0 ± 1
-153.8
Copyright © 2005-
Andrei Lomize
,
Mikhail Lomize
and
Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA