PDB ID or protein name

Viral membrane (88 proteins)

Family Protein Name PDB ID Species Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
1.2.11.02. Capsid protein G8P 2mjz Bacteriophage M13 10 10 30.8 ± 0.3 0 ± 0 -20.4
1.2.11.02. Capsid protein G8P, monomer 2cps Bacteriophage M13 1 1 30.8 ± 3.1 15 ± 3 -19.9
1.2.23.01. M2 proton channel of Influenza A, closed state, V27A mutant 2kwx Influenza virus 4 4 33.4 ± 1.9 2 ± 3 -63.4
1.2.23.01. M2 proton channel, influenza A and B hydrid, complex with rimantadine 2ljc Influenza virus 4 4 30.6 ± 1.8 9 ± 2 -44.9
1.2.23.01. M2 proton channel of Influenza A, drug-bound 2muv Influenza virus 4 4 32.4 ± 1.1 0 ± 0 -59.2
1.2.23.01. M2 proton channel of Influenza A, closed state, S31N, with drug 2ly0 Influenza virus 4 4 34.0 ± 1.6 0 ± 0 -67.5
1.2.23.01. M2 proton channel of Influenza A, closed state 3lbw Influenza virus 4 4 31.1 ± 1.7 7 ± 10 -50.5
1.2.23.01. M2 proton channel of Influenza A, closed state, NMR 2rlf Influenza virus 4 4 34.3 ± 2.0 3 ± 1 -67.6
1.2.23.01. M2 proton channel, influenza A and B hydrid 2ljb Influenza virus 4 4 31.6 ± 1.6 1 ± 1 -51.3
1.2.23.01. M2 proton channel of Influenza A, monomer 4rwb Influenza virus 1 1 31.6 ± 4.5 46 ± 6 -25.4
1.2.23.01. M2 proton channel of Influenza A, open state, complex with amantadine 3c9j Influenza virus 4 4 29.4 ± 1.4 2 ± 3 -65.6
1.2.23.01. M2 proton channel of Influenza A, complex with amantadine 2kqt Influenza virus 4 4 30.2 ± 1.3 0 ± 4 -59.6
1.2.23.01. M2 proton channel of Influenza A, S31N, NMR structure 2n70 Influenza virus 4 4 29.8 ± 1.7 1 ± 0 -65.3
1.2.23.01. M2 proton channel of Influenza A, open state, ligand-free 4qkm Influenza virus 4 4 28.4 ± 1.7 0 ± 0 -55.4
1.2.23.01. M2 proton channel of Influenza A, S31N, crystal structure 5c02 Influenza virus 4 4 28.6 ± 1.9 0 ± 0 -53.5
1.2.23.01. M2 proton channel of Influenza B 2kix Influenza virus 4 4 31.8 ± 1.2 2 ± 3 -64.4
1.2.43.01. Envelope glycoprotein, Zika virus, structure 6 5gzn Zika virus 1 0 5.1 ± 2.6 41 ± 11 -4.9
1.2.43.01. Envelope glycoprotein, Dengue virus type 4 3uaj Dengue virus 1 0 5.6 ± 2.6 17 ± 7 -5.4
1.2.43.01. Envelope glycoprotein 1urz Tick-borne encephalitis virus 3 0 5.9 ± 0.9 1 ± 8 -10.3
1.2.43.01. Envelope glycoprotein, Dengue virus type 2, structure 3 4ut6 Dengue virus 1 0 6.2 ± 3.0 19 ± 15 -5.4
1.2.43.01. Envelope glycoprotein, Zika virus, structure 1 5lcv Zika virus 1 0 6.0 ± 2.6 47 ± 9 -4.9
1.2.43.01. Envelope glycoprotein, Dengue virus type 2, structure 2 3c6e Dengue virus 1 0 2.9 ± 2.7 42 ± 5 -3.6
1.2.43.01. Envelope glycoprotein, Zika virus, structure 5 5lbs Zika virus 1 0 2.3 ± 2.5 62 ± 5 -4.7
1.2.43.01. Envelope glycoprotein 4fg0 St. louis encephalitis virus 3 0 6.5 ± 0.6 4 ± 2 -11.4
1.2.43.01. Envelope glycoprotein, West Nile virus, structure 1 2hg0 West Nile virus 1 0 4.8 ± 2.6 44 ± 4 -4.3
1.2.43.01. Capsid envelop protein complex, Zika, structure 2 5iz7 Zika virus 6 12 25.8 ± 0.0 3 ± 0 -53.2
1.2.43.01. Envelope glycoprotein, Dengue virus type 1 3g7t Dengue virus 3 0 5.9 ± 0.9 1 ± 3 -12.2
1.2.43.01. Envelope glycoprotein, West Nile virus, structure 2 2i69 West Nile virus 1 0 6.7 ± 2.8 5 ± 12 -5.0
1.2.43.01. Envelope glycoprotein, Zika virus, structure 4 5lbv Zika virus 1 0 5.7 ± 2.9 31 ± 6 -5.2
1.2.43.01. Envelope glycoprotein, Dengue virus type 2, structure 1 1ok8 Dengue virus 3 0 5.2 ± 0.9 0 ± 6 -9.5
1.2.43.01. Capsid envelop protein complex, Dengue 3j2p Dengue virus 4 8 22.8 ± 0.4 0 ± 0 -62.7
1.2.43.01. Envelope glycoprotein 3p54 Japanese encephalitis virus 1 0 6.1 ± 2.2 18 ± 6 -6.5
1.2.43.01. Capsid envelop protein complex, Zika, structure 1 5ire Zika virus 6 12 25.8 ± 0.6 11 ± 0 -41.8
1.2.43.01. Envelope glycoprotein, Dengue virus type 3 1uzg Dengue virus 1 0 5.7 ± 2.7 18 ± 7 -5.4
1.2.43.01. Envelope glycoprotein, Dengue virus type 2, structure 5 4utc Dengue virus 1 0 6.3 ± 2.4 13 ± 7 -4.2
1.2.43.01. Envelope glycoprotein, Zika virus, structure 3 5jhm Zika virus 1 0 6.6 ± 2.4 11 ± 8 -4.9
1.2.43.01. Envelope glycoprotein, West Nile virus, structure 4 3iyw West Nile virus 1 0 6.6 ± 2.9 30 ± 15 -4.5
1.2.43.01. Envelope glycoprotein, chimeric 1k4r Dengue virus 1 0 6.6 ± 2.4 21 ± 12 -4.9
1.2.43.01. Envelope glycoprotein, Dengue virus type 2, structure 4 4ut9 Dengue virus 1 0 5.5 ± 2.8 31 ± 8 -5.1
1.2.43.01. Envelope glycoprotein, Zika virus, structure 2 5jhl Zika virus 1 0 5.9 ± 2.8 31 ± 8 -5.5
1.2.43.01. Envelope glycoprotein, West Nile virus, structure 3 3i50 West Nile virus 1 0 6.3 ± 2.8 27 ± 19 -4.4
1.2.43.02. E1 envelope glycoprotein 3n41 Chikungunya virus 1 0 2.5 ± 2.9 71 ± 7 -5.8
1.2.43.02. E1 envelope glycoprotein 1rer Semiliki forest virus 3 0 2.6 ± 2.0 38 ± 5 -6.5
1.2.43.02. E1/E2 envelope glycoprotein complex 2yew Barmah forest virus 8 8 30.0 ± 0.8 0 ± 0 -53.5
1.2.43.02. E1/E2 envelope glycoprotein complex 3j2w Chikungunya virus 8 8 30.8 ± 0.9 2 ± 0 -134.1
1.2.43.02. E1/E2 envelope glycoprotein complex 3j0c Venezuelan equine encephalitis virus 8 8 31.2 ± 1.7 3 ± 1 -96.9
1.2.43.03. Envelope glycoprotein B 3nw8 Human herpesvirus 3 0 4.6 ± 0.0 1 ± 1 -11.7
1.2.43.04. Glycoprotein G, structure 2 5i2s Vesicular stomatitis virus 3 0 5.3 ± 0.4 89 ± 1 -10.4
1.2.43.04. Glycoprotein G, structure 1 5i2m Vesicular stomatitis virus 3 0 6.3 ± 4.2 14 ± 8 -7.9
1.2.43.05. Major envelope glycoprotein 3duz Autographa californica nuclear polyhedrosis virus 3 0 3.2 ± 0.4 4 ± 6 -9.3
1.2.43.06. Outer capsid protein VP4, dimer 2b4h Rotavirus A 2 0 2.2 ± 0.2 4 ± 1 -8.3
1.2.43.06. Outer capsid protein VP4, trimer 2b4i Rotavirus A 3 0 2.9 ± 0.3 2 ± 0 -11.7
1.2.43.07. Glycoprotein C, structure 2 5j9h Puumala virus 3 0 4.8 ± 0.3 2 ± 4 -12.9
1.2.43.07. Glycoprotein C, structure 1 5j81 Puumala virus 3 0 6.0 ± 0.3 0 ± 1 -15.7
1.2.45.01. Envelope small membrane protein 2mm4 Human SARS coronavirus 1 1 29.6 ± 4.1 53 ± 1 -32.2
1.2.45.02. Small hydrophobic protein, peptide 1-14 2nb7 Human respiratory syncytial virus 1 0 4.1 ± 0.9 84 ± 6 -7.7
1.2.45.02. Small hydrophobic protein, peptide 39-49 2nb8 Human respiratory syncytial virus 1 0 8.5 ± 1.2 57 ± 13 -5.9
2.1.21.01. Influenza virus matrix protein M1, structure 1 1aa7 Influenza virus 2 0 2.6 ± 0.8 89 ± 4 -5.6
2.1.21.01. Influenza virus matrix protein M1, structure 2 4pus Influenza virus 2 0 2.3 ± 1.6 81 ± 3 -9.4
2.1.21.02. Matrix protein p10, myristoylated, structure 2 2mxi Mason-Pfizer monkey virus 1 0 3.8 ± 0.7 58 ± 3 -6.3
2.1.21.02. Matrix protein p10 2f76 Mason-Pfizer monkey virus 1 0 3.9 ± 1.2 48 ± 5 -5.8
2.1.21.02. Matrix protein p10, myristoylated, structure 1 2lpy Mason-Pfizer monkey virus 1 0 3.2 ± 0.5 8 ± 6 -3.4
2.1.21.04. Matrix protein p19 1a6s Rous sarcoma virus 1 0 3.1 ± 2.7 89 ± 14 -3.6
2.2.19.01. Adsorption protein p2 1n7v Bacteriophage prd1 1 0 8.7 ± 0.4 81 ± 1 -8.6
2.2.60.01. Matrix protein VP40 1es6 Zaire ebolavirus 1 0 2.1 ± 0.5 80 ± 3 -6.7
2.4.09.01. T4 capsid assembly protease, gp21 5jbl Enterobacteria phage T4 5 0 3.6 ± 0.2 89 ± 0 -12.0
2.4.44.01. Membrane-associated protein VP24, with karyopherin 4u2x Zaire ebolavirus 2 0 4.5 ± 2.1 33 ± 15 -4.3
2.4.50.01. Matrix protein, New Jersey virus 2w2r Vesicular stomatitis virus 1 0 4.1 ± 0.1 57 ± 1 -10.4
2.4.50.01. Matrix protein, Indiana virus 1lg7 Vesicular stomatitis virus 1 0 2.7 ± 0.4 82 ± 2 -7.3
2.4.50.01. Matrix protein, Indiana virus, complex with mRNA export factor 4owr Vesicular stomatitis virus 1 0 2.1 ± 0.8 65 ± 2 -7.6
3.1.01.03. Viral core-E1 signal peptide 2lif Hepatitis C virus 1 1 29.6 ± 5.0 19 ± 10 -16.6
3.1.07.01. Fusion peptide (524-539) of ebolavirus glycoprotein GP2 2rlj Zaire ebolavirus 1 0 5.8 ± 1.8 84 ± 6 -6.8
3.1.07.01. Fusion peptide (507-560) of ebolavirus glycoprotein GP2, mutant 2 2m5f Zaire ebolavirus 1 0 5.7 ± 1.7 29 ± 30 -5.2
3.1.07.01. Fusion peptide (507-560) of ebolavirus glycoprotein GP2, mutant 1 2mb1 Zaire ebolavirus 1 0 3.8 ± 1.8 53 ± 34 -4.5
3.1.07.01. Fusion peptide (507-560) of ebolavirus glycoprotein GP2, wild type 2lcy Zaire ebolavirus 1 0 3.5 ± 2.2 59 ± 9 -4.5
3.1.07.02. gp41-M-MAT, a membrane associated MPER trimer 2lp7 Human immunodeficiency virus type 1 3 3 26.8 ± 0.9 1 ± 1 -14.2
3.1.07.02. Membrane proximal external helix of HIV-1 gp41 (656-683) 2m8o Human immunodeficiency virus type 1 1 0 6.0 ± 5.2 90 ± 4 -5.0
3.1.07.02. Envelope glycoprotein gp41 2x7r Human immunodeficiency virus type 1 3 0 5.5 ± 1.1 0 ± 10 -10.9
3.1.07.02. Transmembrane domain of HIV-1 gp41 (677-716), trimer 5jyn Human immunodeficiency virus type 1 3 3 36.0 ± 1.6 0 ± 2 -22.0
3.1.07.02. Membrane proximal peptide of gp41 (95-121) 2ncs Human immunodeficiency virus type 1 1 0 20.8 ± 2.0 28 ± 3 -14.6
3.1.07.02. Paramyxovirus sv5 fusion protein core 1svf Simian virus 5 6 0 8.4 ± 0.9 0 ± 11 -10.7
3.1.07.03. Hemagglutinin, peptide 330-349, F9A 2jrd Influenza virus 1 0 8.1 ± 4.0 71 ± 5 -6.8
3.1.07.03. Hemagglutinin, fusion peptide 346-365, G1S 1xop Influenza virus 1 0 6.3 ± 0.5 70 ± 13 -11.0
3.1.07.03. Hemagglutinin, fusion peptide 346-365, G13A 2l4g Influenza virus 1 0 11.1 ± 0.4 73 ± 4 -10.4
3.1.07.03. Hemagglutinin, fusion peptide 346-365, H1 subtype 2kxa Influenza virus 1 0 10.3 ± 1.9 84 ± 13 -14.5
3.1.07.03. Hemagglutinin, fusion peptide 346-365, wild type 1ibn Influenza virus 1 0 9.1 ± 1.2 67 ± 7 -8.0
3.1.07.04. Envelope glycoprotein E1, heterodimerization peptide (350-370) 1emz Hepatitis C virus 1 0 6.2 ± 0.2 86 ± 9 -8.5
3.1.07.05. Nonstructural protein 4b, segment 1716-1755 2lvg Hepatitis C virus 1 0 6.4 ± 0.7 82 ± 8 -11.4