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• Protein Classification

• Types (3 types)
• Classes (11 classes)
• Superfamilies (392 superfamilies)
• Families (667 families)
• Species (538 species)
• Localization (24 types)
• All proteins in OPM (2172 proteins)

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1kqf » Formate dehydrogenase

• Type: 1. Transmembrane (3 classes)
• Class: 1.1. Alpha-helical polytopic (72 superfamilies)
• Superfamily: 1.1.05. Electron transport chain complex II superfamily (6 families) 5.A.3 (TCDB)
• Family: 1.1.05.02. Formate dehydrogenase (1 protein) 5.A.3 (TCDB)
• Species: Escherichia coli (178 proteins)
• Localization: Bacterial Gram-negative inner membrane (269 proteins)

1kqf » Formate dehydrogenase
Hydrophobic Thickness	33.7 ± 1.1 Å
Tilt Angle	0 ± 0°
ΔGtransfer	-141.9 kcal/mol
Links to 1kqf	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	subunit B (N-terminus out)
Resolution	1.60 Å
Other PDB entries of this protein	1kqg
Number of TM Secondary Structures	15

6 transmembrane subunits
B - Tilt: 23° - Segments: 1(256-277)
C - Tilt: 4° - Segments: 1(13-36), 2(51-75), 3(112-134), 4(150-174)
D - Tilt: 23° - Segments: 1(256-277)
F - Tilt: 4° - Segments: 1(13-36), 2(52-75), 3(112-134), 4(150-174)
H - Tilt: 25° - Segments: 1(252-277)
I - Tilt: 4° - Segments: 1(13-36), 2(52-75), 3(112-134), 4(150-174)

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA