PDB ID or protein name

1yce » F-type Sodium ATPase

1yce » F-type Sodium ATPase
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Topology in Bacterial Gram-negative inner membrane
Topologyout side
in side
1yce » F-type Sodium ATPase
Hydrophobic Thickness 37.0 ± 0.5 Å
Tilt Angle 0 ± 0°
ΔGtransfer -104.0 kcal/mol
Links to 1yce PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology subunit L (N-terminus out)
Resolution 2.40 Å
Other PDB entries representing this structure 2wgm
Number of TM Secondary Structures 22
11 transmembrane subunits
L - Tilt: 5° - Segments: 1(17-40), 2(54-80)
M - Tilt: 5° - Segments: 1(17-40), 2(54-80)
N - Tilt: 4° - Segments: 1(17-40), 2(54-80)
O - Tilt: 4° - Segments: 1(17-40), 2(54-80)
P - Tilt: 4° - Segments: 1(17-40), 2(54-80)
Q - Tilt: 4° - Segments: 1(17-40), 2(54-80)
R - Tilt: 4° - Segments: 1(17-40), 2(54-80)
S - Tilt: 4° - Segments: 1(17-40), 2(54-80)
T - Tilt: 4° - Segments: 1(17-40), 2(54-80)
U - Tilt: 5° - Segments: 1(17-40), 2(54-80)
V - Tilt: 5° - Segments: 1(17-40), 2(54-80)
Experimental Verification for 1yce » F-type Sodium ATPase
Spatial positions of calculated hydrophobic boundaries are consistent with electron cryo-microsopy data (Vonck et al 2002, Murata et al. 2005).
2 references
Murata, T., Yamato, I., Kakinuma, Y., Leslie, A.G.W., and Walker, J.E. 2005. PubMed
Vonck J, von Nidda TK, Meier T, Matthey U, Mills DJ, Kuhlbrandt W, and Dimroth P (2002) Molecular architecture of the undecameric rotor of a bacterial Na+-ATP synthase. J. Mol. Biol.321: 307-316. PubMed
Comments on 1yce » F-type Sodium ATPase
Hydrophobic boundaries expand when calculated with detergent parameters.