• HOME
• ABOUT OPM
• DOWNLOAD OPM FILES
• CONTACT US
• PPM SERVER
• LIPID COMPOSITION ATLAS

• Protein Classification

• Types (3 types)
• Classes (11 classes)
• Superfamilies (392 superfamilies)
• Families (667 families)
• Species (538 species)
• Localization (24 types)
• All proteins in OPM (2172 proteins)

• Protein Links

• PDB Sum,
• PDB,
• OCA,
• MPKS,
• PDBTM,
• MPDB,
• CGDB

2rdd » Multidrug efflux transporter AcrB with YajC subunit , symmetric

• Type: 1. Transmembrane (3 classes)
• Class: 1.1. Alpha-helical polytopic (72 superfamilies)
• Superfamily: 1.1.28. Resistance-nodulation-cell division (3 families) 2.A.6 (TCDB)
• Family: 1.1.28.01. Hydrophobe/amphiphile efflux-1 family (6 proteins) 2.A.6.2 (TCDB)
• Species: Escherichia coli (178 proteins)
• Localization: Bacterial Gram-negative inner membrane (269 proteins)

2rdd » Multidrug efflux transporter AcrB with YajC subunit , symmetric
Hydrophobic Thickness	28.4 ± 0.5 Å
Tilt Angle	0 ± 0°
ΔGtransfer	-156.2 kcal/mol
Links to 2rdd	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	subunit A (N-terminus in)
Resolution	3.50 Å
Other PDB entries of this protein	none
Number of TM Secondary Structures	39

6 transmembrane subunits
A - Tilt: 5° - Segments: 1(10-26), 2(340-358), 3(363-382), 4(397-414), 5(438-456), 6(471-493), 7(539-556), 8(875-892), 9(896-918), 10(927-947), 11(971-991), 12(1003-1026)
B - Tilt: 5° - Segments: 1(10-26), 2(340-358), 3(363-382), 4(397-414), 5(438-456), 6(471-493), 7(539-556), 8(875-892), 9(896-918), 10(927-947), 11(971-991), 12(1003-1026)
C - Tilt: 5° - Segments: 1(10-26), 2(340-358), 3(363-382), 4(397-414), 5(438-456), 6(471-493), 7(539-556), 8(875-892), 9(896-918), 10(927-947), 11(971-991), 12(1003-1026)
D - Tilt: 60° - Segments: 1(21-51)
E - Tilt: 61° - Segments: 1(21-51)
F - Tilt: 60° - Segments: 1(21-51)

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA