• HOME
• ABOUT OPM
• DOWNLOAD OPM FILES
• CONTACT US
• PPM SERVER
• LIPID COMPOSITION ATLAS

• Protein Classification

• Types (3 types)
• Classes (11 classes)
• Superfamilies (392 superfamilies)
• Families (667 families)
• Species (538 species)
• Localization (24 types)
• All proteins in OPM (2172 proteins)

• Protein Links

• PDB Sum,
• PDB,
• OCA,
• MPKS,
• PDBTM,
• MPDB,
• CGDB

2y0k » Pyroglutamate porin OpdO

• Type: 1. Transmembrane (3 classes)
• Class: 1.3. Beta-barrel transmembrane (26 superfamilies)
• Superfamily: 1.3.19. OprD/AlgE superfamily (n=18,S=22) (2 families)
• Family: 1.3.19.01. Outer membrane porin (Opr) (11 proteins) 1.B.25 (TCDB)
• Species: Pseudomonas aeruginosa (34 proteins)
• Localization: Bacterial Gram-negative outer membrane (136 proteins)

2y0k » Pyroglutamate porin OpdO
Hydrophobic Thickness	23.8 ± 1.2 Å
Tilt Angle	1 ± 0°
ΔGtransfer	-55.8 kcal/mol
Links to 2y0k	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	subunit A (N-terminus in)
Resolution	2.30 Å
Other PDB entries of this protein	3szv
Number of TM Secondary Structures	18

1 transmembrane subunit
A - Tilt: 1° - Segments: 1( 8- 16), 2( 33- 43), 3( 53- 62), 4( 90- 100), 5( 103- 111), 6( 131- 141), 7( 142- 149), 8( 175- 182), 9( 190- 195), 10( 204- 212), 11( 219- 227), 12( 243- 253), 13( 254- 261), 14( 296- 302), 15( 314- 318), 16( 338- 346), 17( 353- 359), 18( 374- 382)

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA