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• Protein Classification

• Types (3 types)
• Classes (11 classes)
• Superfamilies (392 superfamilies)
• Families (667 families)
• Species (538 species)
• Localization (24 types)
• All proteins in OPM (2172 proteins)

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3bo0 » Protein translocase SecY, complex with ribosome 2

• Type: 1. Transmembrane (3 classes)
• Class: 1.1. Alpha-helical polytopic (72 superfamilies)
• Superfamily: 1.1.11. General secretory pathway (Sec) (1 family) 3.A.5 (TCDB)
• Family: 1.1.11.01. Protein translocase (12 proteins) 3.A.5 (TCDB)
• Species: Methanococcus jannaschii (11 proteins)
• Localization: Archaebacterial membrane (54 proteins)

3bo0 » Protein translocase SecY, complex with ribosome 2
Hydrophobic Thickness	29.6 ± 1.2 Å
Tilt Angle	6 ± 2°
ΔGtransfer	-78.0 kcal/mol
Links to 3bo0	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	subunit A (N-terminus cytoplasmic)
Resolution	9.6 Å
Other PDB entries of this protein	3bo1
Number of TM Secondary Structures	12

3 transmembrane subunits
A - Tilt: 7° - Segments: 1( 28- 42), 2( 69- 88), 3( 109- 132), 4( 139- 161), 5( 169- 190), 6( 207- 227), 7( 262- 284), 8( 318- 338), 9( 393- 405), 10( 411- 421)
B - Tilt: 40° - Segments: 1( 36- 62)
C - Tilt: 5° - Segments: 1( 30- 48)

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA