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• Protein Classification

• Types (3 types)
• Classes (11 classes)
• Superfamilies (392 superfamilies)
• Families (667 families)
• Species (538 species)
• Localization (24 types)
• All proteins in OPM (2172 proteins)

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3dkn » Protein translocase SecY, complex with ribosome 1

• Type: 1. Transmembrane (3 classes)
• Class: 1.1. Alpha-helical polytopic (72 superfamilies)
• Superfamily: 1.1.11. General secretory pathway (Sec) (1 family) 3.A.5 (TCDB)
• Family: 1.1.11.01. Protein translocase (12 proteins) 3.A.5 (TCDB)
• Species: Methanococcus jannaschii (11 proteins)
• Localization: Archaebacterial membrane (54 proteins)

3dkn » Protein translocase SecY, complex with ribosome 1
Hydrophobic Thickness	27.8 ± 1.8 Å
Tilt Angle	2 ± 0°
ΔGtransfer	-80.9 kcal/mol
Links to 3dkn	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	subunit A (N-terminus cytoplasmic)
Resolution	8.7 Å
Other PDB entries of this protein	none
Number of TM Secondary Structures	12

3 transmembrane subunits
A - Tilt: 6° - Segments: 1( 28- 42), 2( 71- 88), 3( 109- 129), 4( 140- 161), 5( 169- 192), 6( 209- 227), 7( 255- 277), 8( 313- 331), 9( 380- 393), 10( 399- 409)
B - Tilt: 42° - Segments: 1( 36- 59)
C - Tilt: 3° - Segments: 1( 30- 48)

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA