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• Protein Classification

• Types (3 types)
• Classes (11 classes)
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• Species (538 species)
• Localization (24 types)
• All proteins in OPM (2172 proteins)

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3szd » Porin OpdF

• Type: 1. Transmembrane (3 classes)
• Class: 1.3. Beta-barrel transmembrane (26 superfamilies)
• Superfamily: 1.3.19. OprD/AlgE superfamily (n=18,S=22) (2 families)
• Family: 1.3.19.01. Outer membrane porin (Opr) (11 proteins) 1.B.25 (TCDB)
• Species: Pseudomonas aeruginosa (34 proteins)
• Localization: Bacterial Gram-negative outer membrane (136 proteins)

3szd » Porin OpdF
Hydrophobic Thickness	22.0 ± 1.6 Å
Tilt Angle	3 ± 0°
ΔGtransfer	-60.3 kcal/mol
Links to 3szd	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	in
Resolution	2.31 Å
Other PDB entries of this protein	4fms
Number of TM Secondary Structures	18

1 transmembrane subunit
B - Tilt: 3° - Segments: 1( 15- 22), 2( 42- 50), 3( 60- 67), 4( 98- 108), 5( 109- 117), 6( 137- 143), 7( 148- 155), 8( 184- 191), 9( 196- 202), 10(212- 220), 11( 225- 234), 12( 252- 262), 13( 263- 270), 14( 306- 312), 15( 324- 329), 16( 348- 355), 17( 388- 396)

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA